Strain Fitness in Pseudomonas putida KT2440 around PP_1631

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,828,020	+		PP_1629	0.82	-1.4
1,828,020	+		PP_1629	0.82	-0.9
1,828,021	-		PP_1629	0.82	+0.4
1,828,065	+		PP_1629	0.86	-0.1
1,828,086	-		PP_1629	0.88	-0.3
1,828,223	+				+1.4
1,828,235	+				-1.4
1,828,236	-				+0.7
1,828,236	-				-1.1
1,828,236	-				-1.9
1,828,470	-		PP_1630	0.50	+0.5
1,828,511	+		PP_1630	0.58	-0.7
1,828,511	+		PP_1630	0.58	-0.4
1,828,512	-		PP_1630	0.59	-0.4
1,828,556	+		PP_1630	0.68	+1.3
1,828,655	+		PP_1630	0.89	+0.6
1,828,655	+		PP_1630	0.89	-1.1
1,828,656	-		PP_1630	0.89	-1.6
1,828,702	-				-0.9
1,828,746	+				+1.0
1,828,746	+				-0.5
1,828,786	+				-2.4
1,828,786	+				+0.8
1,828,787	-				+0.9
1,828,790	+				-2.5
1,828,790	+				+1.2
1,828,790	+				+0.9
1,828,790	+				+0.3
1,828,790	+				-0.1
1,828,791	-				-0.5
1,828,791	-				+2.0
1,828,791	-				+1.3
1,828,791	-				+1.3
1,828,791	-				-0.9
1,828,889	+				-1.1
1,828,890	-				+0.1
1,828,890	-				-2.4
1,828,903	+				-2.4
1,828,904	-				-2.5
1,828,938	+				+0.5
1,828,939	-				-1.1
1,828,939	-				+2.6
1,828,972	-				-0.7
1,829,022	-				-2.8
1,829,022	-				-1.4
1,829,022	-				+0.6
1,829,022	-				-0.2
1,829,137	+		PP_1631	0.14	-1.0
1,829,137	+		PP_1631	0.14	+1.4
1,829,138	-		PP_1631	0.14	-2.8
1,829,138	-		PP_1631	0.14	-3.1
1,829,138	-		PP_1631	0.14	-3.4
1,829,183	-		PP_1631	0.18	+0.5
1,829,183	-		PP_1631	0.18	-1.5
1,829,183	-		PP_1631	0.18	-0.1
1,829,227	+		PP_1631	0.22	-0.3
1,829,228	-		PP_1631	0.22	+1.0
1,829,309	-		PP_1631	0.29	-0.3
1,829,386	+		PP_1631	0.36	-2.6
1,829,387	-		PP_1631	0.36	+0.4
1,829,461	-		PP_1631	0.43	+0.4
1,829,461	-		PP_1631	0.43	-3.3
1,829,461	-		PP_1631	0.43	-0.6
1,829,508	+		PP_1631	0.47	-1.1
1,829,664	+		PP_1631	0.61	-0.9
1,829,664	+		PP_1631	0.61	+0.5
1,829,664	+		PP_1631	0.61	+1.4
1,829,800	+		PP_1631	0.73	+4.0
1,829,800	+		PP_1631	0.73	+0.6
1,829,801	-		PP_1631	0.73	-0.1
1,829,801	-		PP_1631	0.73	-3.6
1,829,801	-		PP_1631	0.73	-2.1
1,829,863	+		PP_1631	0.79	-3.3
1,830,095	-				-0.6
1,830,095	-				+1.1
1,830,095	-				-1.9
1,830,124	+				+1.0
1,830,125	-				+0.5
1,830,141	+				-2.5
1,830,142	-				-0.8
1,830,229	-				+1.2
1,830,280	+				-0.9
1,830,299	-		PP_1632	0.18	-0.2
1,830,299	-		PP_1632	0.18	+0.4
1,830,487	+				+3.0
1,830,487	+				-2.7
1,830,488	-				-0.5
1,830,488	-				+1.0
1,830,559	+		PP_1633	0.17	+1.1
1,830,574	+		PP_1633	0.21	-1.9
1,830,574	+		PP_1633	0.21	+2.1
1,830,575	-		PP_1633	0.21	+2.2
1,830,696	+		PP_1633	0.50	+0.5
1,830,737	-		PP_1633	0.60	-1.1
1,830,826	+		PP_1633	0.81	+0.4
1,830,827	-		PP_1633	0.81	+0.4
1,830,893	+				+1.1
1,830,993	+				-1.6
1,831,005	+				+1.2
1,831,006	-				+1.5
1,831,007	+				+0.5
1,831,007	+				-0.9
1,831,007	+				-1.3
1,831,007	+				-0.2
1,831,007	+				-0.2
1,831,008	-				-1.9
1,831,008	-				-1.3
1,831,008	-				+0.6