Strain Fitness in Pseudomonas putida KT2440 around PP_1534

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,738,554	+		PP_1532	0.42	-1.7
1,738,555	-		PP_1532	0.42	+2.1
1,738,556	+		PP_1532	0.42	+2.5
1,738,556	+		PP_1532	0.42	+0.4
1,738,556	+		PP_1532	0.42	-0.3
1,738,556	+		PP_1532	0.42	-3.0
1,738,557	-		PP_1532	0.43	-1.5
1,738,557	-		PP_1532	0.43	-1.0
1,738,606	+		PP_1532	0.47	-2.0
1,738,607	-		PP_1532	0.47	-1.3
1,738,607	-		PP_1532	0.47	+0.4
1,738,626	+		PP_1532	0.49	-1.0
1,738,627	-		PP_1532	0.49	+0.4
1,738,627	-		PP_1532	0.49	+0.5
1,738,670	+		PP_1532	0.53	+1.1
1,738,670	+		PP_1532	0.53	-2.0
1,738,688	-		PP_1532	0.54	+0.5
1,738,735	-		PP_1532	0.59	-3.2
1,738,745	+		PP_1532	0.60	-0.9
1,738,780	+		PP_1532	0.63	-0.2
1,738,788	+		PP_1532	0.63	-3.3
1,738,789	-		PP_1532	0.64	-0.8
1,738,792	+		PP_1532	0.64	-1.7
1,738,792	+		PP_1532	0.64	+0.6
1,738,793	-		PP_1532	0.64	+2.0
1,738,868	+		PP_1532	0.71	+1.9
1,738,924	+		PP_1532	0.76	+1.5
1,738,924	+		PP_1532	0.76	+0.3
1,738,924	+		PP_1532	0.76	-3.5
1,739,099	-				+2.0
1,739,099	-				-1.1
1,739,104	+				-2.5
1,739,104	+				-0.2
1,739,105	-				-0.3
1,739,107	+				+1.4
1,739,107	+				-2.0
1,739,107	+				+0.9
1,739,107	+				-0.0
1,739,108	-				+1.5
1,739,108	-				-2.4
1,739,108	-				-0.5
1,739,108	-				+1.3
1,739,108	-				+1.0
1,739,120	+				+1.2
1,739,141	-				-0.0
1,739,155	-				-2.0
1,739,214	+		PP_1533	0.17	-0.5
1,739,285	+		PP_1533	0.46	-3.2
1,739,285	+		PP_1533	0.46	+0.3
1,739,285	+		PP_1533	0.46	+0.2
1,739,285	+		PP_1533	0.46	-0.4
1,739,285	+		PP_1533	0.46	-2.1
1,739,285	+		PP_1533	0.46	+0.4
1,739,285	+		PP_1533	0.46	+1.2
1,739,285	+		PP_1533	0.46	-0.3
1,739,285	+		PP_1533	0.46	-0.4
1,739,286	-		PP_1533	0.47	+0.8
1,739,286	-		PP_1533	0.47	-2.2
1,739,286	-		PP_1533	0.47	-2.9
1,739,286	-		PP_1533	0.47	+0.3
1,739,286	-		PP_1533	0.47	+1.2
1,739,286	-		PP_1533	0.47	+1.4
1,739,288	+		PP_1533	0.47	+1.6
1,739,288	+		PP_1533	0.47	-2.8
1,739,288	+		PP_1533	0.47	-0.6
1,739,288	+		PP_1533	0.47	-1.3
1,739,288	+		PP_1533	0.47	-0.6
1,739,288	+		PP_1533	0.47	+0.5
1,739,289	-		PP_1533	0.48	+2.0
1,739,289	-		PP_1533	0.48	-0.6
1,739,289	-		PP_1533	0.48	-1.5
1,739,289	-		PP_1533	0.48	+1.6
1,739,305	+		PP_1533	0.54	+0.5
1,739,458	-				+0.1
1,739,464	+				-0.4
1,739,464	+				-2.6
1,739,465	-				+1.5
1,739,558	+		PP_1534	0.34	-0.3
1,739,558	+		PP_1534	0.34	-3.1
1,739,656	+		PP_1534	0.65	+2.1
1,739,656	+		PP_1534	0.65	-0.1
1,739,656	+		PP_1534	0.65	-3.2
1,739,672	+		PP_1534	0.70	-2.5
1,739,672	+		PP_1534	0.70	-2.3
1,739,672	+		PP_1534	0.70	-1.0
1,739,772	+				-0.8
1,739,772	+				+1.8
1,739,772	+				-0.4
1,739,772	+				+0.3
1,739,772	+				-0.6
1,739,773	-				+0.8
1,739,811	+				+0.5
1,739,931	+		PP_1535	0.23	+1.0
1,739,931	+		PP_1535	0.23	-0.1
1,739,931	+		PP_1535	0.23	-2.8
1,739,932	-		PP_1535	0.23	-2.2
1,739,932	-		PP_1535	0.23	+1.0
1,739,932	-		PP_1535	0.23	+1.7
1,740,046	+		PP_1535	0.48	-3.2
1,740,447	+		PP_1536	0.38	-0.9
1,740,476	+		PP_1536	0.45	+0.8
1,740,517	-		PP_1536	0.56	+0.6
1,740,600	-		PP_1536	0.78	-3.3
1,740,665	+				-2.8
1,740,734	+		PP_1537	0.23	+0.0
1,740,734	+		PP_1537	0.23	+1.8