Strain Fitness in Pseudomonas putida KT2440 around PP_1523

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,727,908	-		PP_1520	0.90	+0.9
1,728,033	+				-1.7
1,728,034	-				+1.8
1,728,108	+				-2.7
1,728,109	-				+0.1
1,728,109	-				+0.2
1,728,199	-				-0.4
1,728,199	-				-0.3
1,728,210	+				+1.0
1,728,220	+				+0.3
1,728,228	+				-2.7
1,728,288	+		PP_1521	0.39	-1.1
1,728,288	+		PP_1521	0.39	+0.3
1,728,289	-		PP_1521	0.40	-1.0
1,728,289	-		PP_1521	0.40	-0.5
1,728,289	-		PP_1521	0.40	-2.0
1,728,291	-		PP_1521	0.41	+0.1
1,728,376	+				-0.2
1,728,377	-				-3.2
1,728,390	-				-0.1
1,728,390	-				-2.1
1,728,422	+		PP_1522	0.12	-2.7
1,728,423	-		PP_1522	0.12	-2.1
1,728,423	-		PP_1522	0.12	+0.5
1,728,423	-		PP_1522	0.12	-0.5
1,728,482	+		PP_1522	0.40	-1.4
1,728,483	-				-0.1
1,728,483	-		PP_1522	0.41	-2.6
1,728,483	-		PP_1522	0.41	-0.6
1,728,523	-		PP_1522	0.60	+0.4
1,728,551	-		PP_1522	0.73	+0.9
1,728,551	-		PP_1522	0.73	+0.9
1,728,593	+				-2.3
1,728,594	-				+1.1
1,728,594	-				+0.4
1,728,594	-				-1.3
1,728,625	+				+0.6
1,728,626	-				-3.0
1,728,737	+				+0.1
1,728,737	+				-2.3
1,728,737	+				-1.5
1,728,738	-				+0.6
1,728,738	-				+1.3
1,728,738	-				+0.2
1,728,738	-				-1.3
1,728,738	-				-2.1
1,728,738	-				-2.8
1,728,738	-				-0.3
1,728,916	+		PP_1523	0.49	-3.0
1,728,916	+		PP_1523	0.49	-0.2
1,728,936	+		PP_1523	0.55	-1.2
1,728,989	+		PP_1523	0.69	-2.5
1,728,990	-		PP_1523	0.69	-2.1
1,728,990	-		PP_1523	0.69	+0.9
1,729,082	-				+1.3
1,729,082	-				+0.2
1,729,082	-				+0.0
1,729,107	-				+1.8
1,729,144	-				-1.6
1,729,150	-				-0.8
1,729,356	+		PP_1524	0.29	-0.5
1,729,365	-		PP_1524	0.30	+0.8
1,729,374	+		PP_1524	0.31	+0.1
1,729,374	+		PP_1524	0.31	-0.3
1,729,374	+		PP_1524	0.31	+0.2
1,729,375	-		PP_1524	0.31	+2.6
1,729,611	+		PP_1524	0.60	+2.1
1,729,653	+		PP_1524	0.65	-1.7
1,729,653	+		PP_1524	0.65	-0.1
1,729,654	-		PP_1524	0.65	+1.6
1,729,654	-		PP_1524	0.65	-3.0
1,729,654	-		PP_1524	0.65	-1.5
1,729,656	+		PP_1524	0.65	+0.3
1,729,657	-		PP_1524	0.66	-1.7
1,729,657	-		PP_1524	0.66	-0.8
1,729,740	+		PP_1524	0.76	-0.4