Strain Fitness in Pseudomonas putida KT2440 around PP_1450

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,655,982	+		PP_1449	0.83	-0.1
1,655,986	-		PP_1449	0.83	-2.9
1,655,986	-		PP_1449	0.83	-2.6
1,655,989	+		PP_1449	0.83	-2.7
1,655,989	+		PP_1449	0.83	+0.1
1,655,990	-		PP_1449	0.83	-3.1
1,655,990	-		PP_1449	0.83	+2.2
1,655,990	-		PP_1449	0.83	-1.2
1,656,204	-		PP_1449	0.88	-0.2
1,656,241	-		PP_1449	0.88	-1.4
1,656,249	-		PP_1449	0.89	-1.5
1,656,355	+				-0.3
1,656,355	+				+0.3
1,656,355	+				+0.0
1,656,355	+				-2.3
1,656,355	+				-0.6
1,656,355	+				-0.9
1,656,356	-				+1.7
1,656,356	-				+0.1
1,656,356	-				+0.2
1,656,356	-				-0.7
1,656,360	-				-0.6
1,656,430	-				+1.7
1,656,549	-				-0.3
1,656,749	-				+0.4
1,656,866	+				-3.4
1,656,867	-				+1.0
1,656,867	-				-2.3
1,657,006	+		PP_1450	0.12	+0.9
1,657,006	+		PP_1450	0.12	+0.4
1,657,053	+		PP_1450	0.15	+1.2
1,657,086	-		PP_1450	0.17	+1.8
1,657,086	-		PP_1450	0.17	-3.0
1,657,086	-		PP_1450	0.17	+1.6
1,657,167	-		PP_1450	0.22	+0.6
1,657,244	+		PP_1450	0.26	-1.6
1,657,332	-		PP_1450	0.32	+0.7
1,657,382	-		PP_1450	0.35	-0.1
1,657,382	-		PP_1450	0.35	-3.0
1,657,524	-		PP_1450	0.43	+0.4
1,657,556	+		PP_1450	0.45	+0.3
1,657,574	+		PP_1450	0.46	-1.4
1,657,574	+		PP_1450	0.46	+3.1
1,657,574	+		PP_1450	0.46	-3.2
1,657,575	-		PP_1450	0.46	+0.5
1,657,575	-		PP_1450	0.46	-2.8
1,657,579	+		PP_1450	0.46	+1.7
1,657,579	+		PP_1450	0.46	+1.6
1,657,579	+		PP_1450	0.46	+0.3
1,657,580	-		PP_1450	0.46	-0.2
1,657,580	-		PP_1450	0.46	-3.0
1,657,580	-		PP_1450	0.46	-0.6
1,657,617	-		PP_1450	0.48	+0.6
1,657,628	+		PP_1450	0.49	-0.6
1,657,629	-		PP_1450	0.49	+0.4
1,657,629	-		PP_1450	0.49	-2.0
1,657,629	-		PP_1450	0.49	-0.6
1,657,629	-		PP_1450	0.49	-2.2
1,657,632	-		PP_1450	0.49	+1.0
1,657,884	-		PP_1450	0.64	+3.2
1,657,934	+		PP_1450	0.67	-3.4
1,657,984	+				+0.4
1,657,985	-		PP_1450	0.70	-1.9
1,658,104	+		PP_1450	0.77	-1.1
1,658,104	+		PP_1450	0.77	-3.2
1,658,104	+		PP_1450	0.77	-1.7
1,658,105	-		PP_1450	0.77	-1.5
1,658,105	-		PP_1450	0.77	-0.2
1,658,105	-		PP_1450	0.77	+1.3
1,658,105	-		PP_1450	0.77	-0.2
1,658,105	-		PP_1450	0.77	+0.1
1,658,105	-		PP_1450	0.77	-0.2
1,658,105	-		PP_1450	0.77	-1.4
1,658,108	+		PP_1450	0.77	-0.6
1,658,108	+		PP_1450	0.77	+0.7
1,658,109	-		PP_1450	0.77	-3.5
1,658,109	-		PP_1450	0.77	-0.4
1,658,109	-		PP_1450	0.77	-0.3
1,658,109	-		PP_1450	0.77	+2.7
1,658,305	+		PP_1450	0.89	+0.0
1,658,307	+				+1.4
1,658,308	-		PP_1450	0.89	-0.8
1,658,308	-		PP_1450	0.89	-2.5
1,658,528	-				+0.6
1,658,568	+				+1.3
1,658,568	+				-0.1
1,658,568	+				-1.3
1,658,569	-				+1.3
1,658,569	-				+0.2
1,658,569	-				-3.0
1,658,569	-				+1.1
1,658,613	+				-3.4
1,658,613	+				-2.3
1,658,613	+				+1.2
1,658,613	+				+1.0
1,658,614	-				-0.7
1,658,635	+				-0.9
1,658,635	+				-2.0
1,658,635	+				-2.3
1,658,636	-				-0.3
1,658,636	-				+0.6
1,658,637	+				+0.0
1,658,748	+		PP_1451	0.20	+0.1
1,658,749	-		PP_1451	0.20	+0.6
1,658,749	-		PP_1451	0.20	+1.3
1,658,853	+		PP_1451	0.39	+1.9
1,658,910	+		PP_1451	0.49	+1.8
1,658,986	-		PP_1451	0.63	+0.5
1,659,195	+				-2.7
1,659,195	+				+0.8
1,659,195	+				-0.2
1,659,195	+				-2.1
1,659,195	+				-3.1
1,659,195	+				+0.4
1,659,196	-				-2.6
1,659,196	-				+1.2
1,659,196	-				-1.7
1,659,196	-				-1.7
1,659,196	-				-0.6
1,659,202	-				+1.7
1,659,217	+				-0.1
1,659,217	+				-0.3
1,659,217	+				+0.0
1,659,218	-				-1.3
1,659,218	-				-0.2
1,659,250	+				+0.0
1,659,250	+				+0.4
1,659,251	-				-2.9
1,659,251	-				-0.8
1,659,251	-				-2.7
1,659,251	-				+0.4
1,659,251	-				+0.7
1,659,261	+				-0.7
1,659,292	+		PP_1452	0.14	-0.4
1,659,292	+		PP_1452	0.14	+1.1
1,659,293	-		PP_1452	0.14	+0.5
1,659,295	+		PP_1452	0.14	-1.2
1,659,295	+		PP_1452	0.14	+0.7
1,659,295	+		PP_1452	0.14	+0.2
1,659,296	-		PP_1452	0.14	-2.6
1,659,296	-		PP_1452	0.14	-1.3
1,659,303	+		PP_1452	0.16	+0.8
1,659,303	+		PP_1452	0.16	+0.6
1,659,303	+		PP_1452	0.16	-0.3
1,659,303	+		PP_1452	0.16	+1.0
1,659,303	+		PP_1452	0.16	+1.7
1,659,304	-		PP_1452	0.16	-0.7
1,659,304	-		PP_1452	0.16	-2.7
1,659,345	+		PP_1452	0.23	+1.2
1,659,346	-		PP_1452	0.24	-1.0
1,659,470	-		PP_1452	0.46	+0.4
1,659,470	-		PP_1452	0.46	+1.7