Strain Fitness in Pseudomonas putida KT2440 around PP_1449

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,651,295	+		PP_1447	0.40	+2.4
1,651,296	-		PP_1447	0.40	+0.6
1,651,296	-		PP_1447	0.40	-3.3
1,651,296	-		PP_1447	0.40	-3.3
1,651,418	+		PP_1447	0.89	+0.6
1,651,418	+		PP_1447	0.89	-0.5
1,651,419	-		PP_1447	0.90	-3.0
1,651,419	-		PP_1447	0.90	-2.2
1,651,520	-		PP_1448	0.12	-1.7
1,651,703	+		PP_1448	0.40	-3.3
1,651,704	-		PP_1448	0.41	-0.5
1,651,725	+		PP_1448	0.44	-2.7
1,651,726	-		PP_1448	0.44	+0.2
1,651,813	-		PP_1448	0.58	+0.4
1,651,813	-		PP_1448	0.58	-0.6
1,651,813	-		PP_1448	0.58	-0.1
1,651,813	-		PP_1448	0.58	-2.2
1,651,821	+		PP_1448	0.59	-0.8
1,651,821	+		PP_1448	0.59	-1.6
1,651,821	+		PP_1448	0.59	+0.4
1,651,822	-		PP_1448	0.59	-3.0
1,651,822	-		PP_1448	0.59	-0.1
1,651,822	-		PP_1448	0.59	-1.1
1,651,822	-		PP_1448	0.59	-2.6
1,651,896	+		PP_1448	0.71	-2.7
1,651,938	+		PP_1448	0.77	+0.1
1,651,938	+		PP_1448	0.77	-0.6
1,651,938	+		PP_1448	0.77	-2.5
1,651,939	-		PP_1448	0.78	+0.2
1,651,939	-		PP_1448	0.78	+0.9
1,651,939	-		PP_1448	0.78	-1.7
1,651,939	-		PP_1448	0.78	-1.9
1,651,975	-		PP_1448	0.83	+0.7
1,652,087	-				-3.2
1,652,148	-				-0.5
1,652,148	-				+1.2
1,652,243	+				-0.6
1,652,244	-				+0.1
1,652,289	+				+0.2
1,652,290	-				-0.2
1,652,497	+				+0.8
1,652,497	+				+2.2
1,652,498	-				-4.2
1,652,560	-				-2.6
1,652,717	+		PP_1449	0.10	+0.3
1,652,717	+		PP_1449	0.10	-2.8
1,652,717	+		PP_1449	0.10	+0.8
1,652,829	+		PP_1449	0.13	-1.9
1,652,913	+		PP_1449	0.15	+0.8
1,652,913	+		PP_1449	0.15	-2.5
1,652,947	+		PP_1449	0.16	+0.8
1,653,247	+		PP_1449	0.22	+0.6
1,653,247	+		PP_1449	0.22	-1.4
1,653,373	+		PP_1449	0.25	+1.1
1,653,373	+		PP_1449	0.25	+0.5
1,653,373	+		PP_1449	0.25	+0.8
1,653,374	-				+2.4
1,653,374	-		PP_1449	0.25	+0.2
1,653,448	+		PP_1449	0.27	+0.3
1,653,449	-		PP_1449	0.27	+0.6
1,653,449	-		PP_1449	0.27	-0.1
1,653,449	-		PP_1449	0.27	+0.1
1,653,521	+		PP_1449	0.28	-0.1
1,653,521	+		PP_1449	0.28	-2.6
1,653,522	-		PP_1449	0.28	+1.1
1,653,696	-		PP_1449	0.32	+0.2
1,653,718	+		PP_1449	0.33	-1.6
1,653,719	-		PP_1449	0.33	-0.1
1,653,740	+		PP_1449	0.33	-3.0
1,653,741	-		PP_1449	0.33	-0.7
1,653,860	+		PP_1449	0.36	-2.6
1,653,860	+		PP_1449	0.36	+1.2
1,653,861	-		PP_1449	0.36	+0.3
1,653,861	-		PP_1449	0.36	+0.8
1,653,861	-		PP_1449	0.36	-0.1
1,654,188	-		PP_1449	0.43	+0.4
1,654,209	+		PP_1449	0.43	-0.3
1,654,504	+		PP_1449	0.50	-0.1
1,654,505	-		PP_1449	0.50	+0.7
1,654,505	-		PP_1449	0.50	+2.8
1,654,698	-		PP_1449	0.54	-2.3
1,654,893	+		PP_1449	0.59	-0.2
1,654,894	-		PP_1449	0.59	+0.6
1,654,894	-		PP_1449	0.59	+1.2
1,654,894	-		PP_1449	0.59	+1.0
1,654,894	-		PP_1449	0.59	+0.5
1,654,894	-		PP_1449	0.59	+0.2
1,654,954	+		PP_1449	0.60	+0.4
1,655,011	-		PP_1449	0.61	-1.2
1,655,208	+		PP_1449	0.66	+1.8
1,655,356	+		PP_1449	0.69	-1.2
1,655,356	+		PP_1449	0.69	-1.7
1,655,357	-		PP_1449	0.69	+2.7
1,655,459	-		PP_1449	0.71	+0.3
1,655,459	-		PP_1449	0.71	+0.7
1,655,982	+		PP_1449	0.83	-0.1
1,655,986	-		PP_1449	0.83	-2.9
1,655,986	-		PP_1449	0.83	-2.6
1,655,989	+		PP_1449	0.83	-2.7
1,655,989	+		PP_1449	0.83	+0.1
1,655,990	-		PP_1449	0.83	-3.1
1,655,990	-		PP_1449	0.83	+2.2
1,655,990	-		PP_1449	0.83	-1.2
1,656,204	-		PP_1449	0.88	-0.2
1,656,241	-		PP_1449	0.88	-1.4
1,656,249	-		PP_1449	0.89	-1.5
1,656,355	+				-0.3
1,656,355	+				+0.3
1,656,355	+				+0.0
1,656,355	+				-2.3
1,656,355	+				-0.6
1,656,355	+				-0.9
1,656,356	-				+1.7
1,656,356	-				+0.1
1,656,356	-				+0.2
1,656,356	-				-0.7
1,656,360	-				-0.6
1,656,430	-				+1.7
1,656,549	-				-0.3
1,656,749	-				+0.4
1,656,866	+				-3.4
1,656,867	-				+1.0
1,656,867	-				-2.3
1,657,006	+		PP_1450	0.12	+0.9
1,657,006	+		PP_1450	0.12	+0.4
1,657,053	+		PP_1450	0.15	+1.2
1,657,086	-		PP_1450	0.17	+1.8
1,657,086	-		PP_1450	0.17	-3.0
1,657,086	-		PP_1450	0.17	+1.6
1,657,167	-		PP_1450	0.22	+0.6
1,657,244	+		PP_1450	0.26	-1.6
1,657,332	-		PP_1450	0.32	+0.7
1,657,382	-		PP_1450	0.35	-0.1
1,657,382	-		PP_1450	0.35	-3.0
1,657,524	-		PP_1450	0.43	+0.4
1,657,556	+		PP_1450	0.45	+0.3
1,657,574	+		PP_1450	0.46	-1.4
1,657,574	+		PP_1450	0.46	+3.1
1,657,574	+		PP_1450	0.46	-3.2
1,657,575	-		PP_1450	0.46	+0.5
1,657,575	-		PP_1450	0.46	-2.8
1,657,579	+		PP_1450	0.46	+1.7
1,657,579	+		PP_1450	0.46	+1.6
1,657,579	+		PP_1450	0.46	+0.3
1,657,580	-		PP_1450	0.46	-0.2
1,657,580	-		PP_1450	0.46	-3.0
1,657,580	-		PP_1450	0.46	-0.6
1,657,617	-		PP_1450	0.48	+0.6
1,657,628	+		PP_1450	0.49	-0.6
1,657,629	-		PP_1450	0.49	+0.4
1,657,629	-		PP_1450	0.49	-2.0
1,657,629	-		PP_1450	0.49	-0.6
1,657,629	-		PP_1450	0.49	-2.2
1,657,632	-		PP_1450	0.49	+1.0