Strain Fitness in Pseudomonas putida KT2440 around PP_1448

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,650,700	+		PP_1446	0.82	-0.5
1,650,729	-		PP_1446	0.84	+3.0
1,650,729	-		PP_1446	0.84	-2.8
1,650,729	-		PP_1446	0.84	+1.4
1,650,729	-		PP_1446	0.84	-0.7
1,650,837	+		PP_1446	0.89	-1.3
1,650,861	+				+2.9
1,651,052	+				+0.4
1,651,052	+				+1.2
1,651,053	-				-0.8
1,651,183	-				+0.7
1,651,183	-				+0.6
1,651,183	-				-0.6
1,651,183	-				+0.6
1,651,192	+				-0.7
1,651,193	-				+1.3
1,651,193	-				+1.3
1,651,295	+		PP_1447	0.40	+2.4
1,651,296	-		PP_1447	0.40	+0.6
1,651,296	-		PP_1447	0.40	-3.3
1,651,296	-		PP_1447	0.40	-3.3
1,651,418	+		PP_1447	0.89	+0.6
1,651,418	+		PP_1447	0.89	-0.5
1,651,419	-		PP_1447	0.90	-3.0
1,651,419	-		PP_1447	0.90	-2.2
1,651,520	-		PP_1448	0.12	-1.7
1,651,703	+		PP_1448	0.40	-3.3
1,651,704	-		PP_1448	0.41	-0.5
1,651,725	+		PP_1448	0.44	-2.7
1,651,726	-		PP_1448	0.44	+0.2
1,651,813	-		PP_1448	0.58	+0.4
1,651,813	-		PP_1448	0.58	-0.6
1,651,813	-		PP_1448	0.58	-0.1
1,651,813	-		PP_1448	0.58	-2.2
1,651,821	+		PP_1448	0.59	-0.8
1,651,821	+		PP_1448	0.59	-1.6
1,651,821	+		PP_1448	0.59	+0.4
1,651,822	-		PP_1448	0.59	-3.0
1,651,822	-		PP_1448	0.59	-0.1
1,651,822	-		PP_1448	0.59	-1.1
1,651,822	-		PP_1448	0.59	-2.6
1,651,896	+		PP_1448	0.71	-2.7
1,651,938	+		PP_1448	0.77	+0.1
1,651,938	+		PP_1448	0.77	-0.6
1,651,938	+		PP_1448	0.77	-2.5
1,651,939	-		PP_1448	0.78	+0.2
1,651,939	-		PP_1448	0.78	+0.9
1,651,939	-		PP_1448	0.78	-1.7
1,651,939	-		PP_1448	0.78	-1.9
1,651,975	-		PP_1448	0.83	+0.7
1,652,087	-				-3.2
1,652,148	-				-0.5
1,652,148	-				+1.2
1,652,243	+				-0.6
1,652,244	-				+0.1
1,652,289	+				+0.2
1,652,290	-				-0.2
1,652,497	+				+0.8
1,652,497	+				+2.2
1,652,498	-				-4.2
1,652,560	-				-2.6
1,652,717	+		PP_1449	0.10	+0.3
1,652,717	+		PP_1449	0.10	-2.8
1,652,717	+		PP_1449	0.10	+0.8
1,652,829	+		PP_1449	0.13	-1.9
1,652,913	+		PP_1449	0.15	+0.8
1,652,913	+		PP_1449	0.15	-2.5
1,652,947	+		PP_1449	0.16	+0.8