Strain Fitness in Pseudomonas putida KT2440 around PP_1425

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,624,365	-				+0.4
1,624,383	+				+0.7
1,624,383	+				+0.1
1,624,384	-				+0.1
1,624,384	-				-1.0
1,624,384	-				+1.1
1,624,384	-				+0.8
1,624,403	-				-3.1
1,624,403	-				-2.6
1,624,403	-				+1.4
1,624,406	+				+0.8
1,624,406	+				-2.5
1,624,406	+				-0.1
1,624,406	+				-1.6
1,624,407	-				-3.2
1,624,407	-				-0.6
1,624,407	-				-2.0
1,624,407	-				-2.8
1,624,451	+				-2.3
1,624,451	+				-3.0
1,624,451	+				+0.7
1,624,451	+				+1.7
1,624,451	+				-1.5
1,624,452	-				-2.5
1,624,452	-				+0.6
1,624,453	+				-1.0
1,624,453	+				+1.6
1,624,783	-		PP_1425	0.14	-2.2
1,624,901	+		PP_1425	0.40	+0.3
1,624,901	+		PP_1425	0.40	+0.9
1,624,901	+		PP_1425	0.40	-1.6
1,624,902	-		PP_1425	0.40	-1.4
1,625,081	+		PP_1425	0.79	-2.7
1,625,081	+		PP_1425	0.79	+0.0
1,625,081	+		PP_1425	0.79	-0.8
1,625,081	+		PP_1425	0.79	-0.4
1,625,082	-		PP_1425	0.79	+2.4
1,625,082	-		PP_1425	0.79	-2.5
1,625,083	+		PP_1425	0.79	-1.4
1,625,083	+		PP_1425	0.79	-2.3
1,625,084	-		PP_1425	0.80	+0.4
1,625,084	-		PP_1425	0.80	-2.7
1,625,099	-		PP_1425	0.83	-2.0
1,625,175	+				-0.9
1,625,245	+				-2.3
1,625,284	-				-1.2
1,625,295	+				-2.8
1,625,296	-				+1.4
1,625,296	-				-2.2
1,625,397	+		PP_1426	0.10	+0.1
1,625,397	+		PP_1426	0.10	-1.0
1,625,397	+		PP_1426	0.10	-3.2
1,625,398	-		PP_1426	0.10	-2.0
1,625,398	-		PP_1426	0.10	-2.8
1,625,398	-		PP_1426	0.10	-2.9
1,625,406	+		PP_1426	0.11	-1.8
1,625,407	-		PP_1426	0.11	-0.5
1,625,407	-		PP_1426	0.11	-1.9
1,625,491	-		PP_1426	0.16	+0.8
1,625,491	-		PP_1426	0.16	-0.3
1,625,646	+		PP_1426	0.26	-1.3
1,625,647	-		PP_1426	0.26	+0.7
1,625,647	-		PP_1426	0.26	+0.6
1,625,727	+		PP_1426	0.31	-2.2
1,625,727	+		PP_1426	0.31	-3.0
1,625,727	+		PP_1426	0.31	+1.4
1,625,727	+		PP_1426	0.31	+0.6
1,625,727	+		PP_1426	0.31	+0.8
1,625,727	+		PP_1426	0.31	+0.1
1,625,728	-		PP_1426	0.31	-0.5
1,625,728	-		PP_1426	0.31	-0.6
1,625,728	-		PP_1426	0.31	+1.4
1,625,728	-		PP_1426	0.31	-0.3
1,625,728	-		PP_1426	0.31	-1.8
1,625,784	+		PP_1426	0.34	-0.4
1,625,784	+		PP_1426	0.34	-2.5
1,625,784	+		PP_1426	0.34	+1.9
1,625,784	+		PP_1426	0.34	+1.5
1,625,784	+		PP_1426	0.34	+0.4
1,625,785	-		PP_1426	0.34	+1.2
1,625,853	+		PP_1426	0.39	+1.7
1,625,911	-		PP_1426	0.42	-0.2
1,625,912	+		PP_1426	0.42	+1.4
1,625,912	+		PP_1426	0.42	+2.1
1,625,912	+		PP_1426	0.42	+0.7
1,625,912	+		PP_1426	0.42	+1.0
1,625,913	-		PP_1426	0.42	-0.3
1,625,913	-		PP_1426	0.42	+0.0
1,626,093	+		PP_1426	0.54	-0.7