Strain Fitness in Pseudomonas putida KT2440 around PP_1391

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,585,562	-		PP_1389	0.20	-2.1
1,585,562	-		PP_1389	0.20	-0.9
1,585,885	+		PP_1389	0.57	-2.1
1,585,914	-		PP_1389	0.60	-0.0
1,585,924	-		PP_1389	0.61	-2.6
1,586,028	+		PP_1389	0.73	+1.0
1,586,028	+		PP_1389	0.73	+0.2
1,586,029	-		PP_1389	0.73	+2.4
1,586,029	-		PP_1389	0.73	-2.4
1,586,029	-		PP_1389	0.73	-1.4
1,586,106	+		PP_1389	0.82	-1.1
1,586,106	+		PP_1389	0.82	+0.4
1,586,107	-		PP_1389	0.82	+1.4
1,586,131	-		PP_1389	0.85	+0.9
1,586,131	-		PP_1389	0.85	-2.9
1,586,205	+				-0.9
1,586,206	-				-0.6
1,586,206	-				-0.6
1,586,206	-				+0.3
1,586,206	-				+0.4
1,586,244	+				-0.0
1,586,245	-				+0.2
1,586,245	-				-0.6
1,586,245	-				-1.8
1,586,341	-		PP_1390	0.31	-1.0
1,586,365	+		PP_1390	0.44	-1.8
1,586,397	-		PP_1390	0.62	+0.6
1,586,415	+		PP_1390	0.72	+0.9
1,586,490	+				+0.5
1,586,491	-				-0.4
1,586,491	-				-0.2
1,586,498	+				-2.2
1,586,498	+				-1.8
1,586,498	+				-1.1
1,586,498	+				+0.3
1,586,498	+				-2.1
1,586,499	-				-1.9
1,586,501	+				+0.6
1,586,501	+				-0.7
1,586,501	+				+1.6
1,586,502	-				+1.9
1,586,502	-				-1.6
1,586,503	+				-0.6
1,586,503	+				-2.6
1,586,503	+				-1.7
1,586,503	+				+0.9
1,586,503	+				-3.1
1,586,503	+				-0.6
1,586,503	+				+0.3
1,586,503	+				+1.8
1,586,503	+				-0.3
1,586,503	+				-2.6
1,586,503	+				+0.5
1,586,503	+				-0.1
1,586,503	+				-1.5
1,586,504	-				-1.9
1,586,504	-				-3.2
1,586,504	-				-2.6
1,586,504	-				-0.5
1,586,504	-				-0.8
1,586,595	+		PP_1391	0.11	-2.7
1,586,595	+		PP_1391	0.11	-1.7
1,586,595	+		PP_1391	0.11	+0.0
1,586,595	+		PP_1391	0.11	-1.2
1,586,596	-		PP_1391	0.11	+1.1
1,586,596	-		PP_1391	0.11	-3.5
1,586,596	-		PP_1391	0.11	+0.1
1,586,596	-		PP_1391	0.11	+0.1
1,586,598	-		PP_1391	0.11	+0.2
1,586,598	-		PP_1391	0.11	-0.4
1,586,598	-		PP_1391	0.11	-2.3
1,586,684	+		PP_1391	0.21	+0.6
1,586,703	+		PP_1391	0.23	-1.3
1,586,703	+		PP_1391	0.23	+0.6
1,586,703	+		PP_1391	0.23	-0.9
1,586,825	+		PP_1391	0.36	+0.4
1,586,826	-		PP_1391	0.36	-0.1
1,586,826	-		PP_1391	0.36	-0.4
1,586,826	-		PP_1391	0.36	-2.3
1,586,826	-		PP_1391	0.36	+0.0
1,587,065	+		PP_1391	0.62	-0.4
1,587,065	+		PP_1391	0.62	-1.4
1,587,066	-		PP_1391	0.63	-0.6
1,587,066	-		PP_1391	0.63	-0.3
1,587,108	+		PP_1391	0.67	-1.9
1,587,109	-		PP_1391	0.67	-1.0
1,587,109	-		PP_1391	0.67	+1.4
1,587,121	-		PP_1391	0.69	-2.1
1,587,121	-		PP_1391	0.69	-0.0
1,587,300	-		PP_1391	0.88	-0.9
1,587,323	-				-3.0
1,587,332	+				+0.6
1,587,332	+				-3.1
1,587,431	+				-0.6
1,587,431	+				+1.1
1,587,467	+				+0.1
1,587,471	+				-1.4
1,587,471	+				-2.2
1,587,471	+				+0.4
1,587,471	+				-1.3
1,587,471	+				-2.6
1,587,471	+				+1.5
1,587,471	+				+1.8
1,587,471	+				-2.6
1,587,472	-				-1.2
1,587,472	-				-2.9
1,587,472	-				-1.7
1,587,472	-				+0.3
1,587,472	-				-1.3
1,587,472	-				+2.4
1,587,502	+				-2.8
1,587,584	-				+0.4
1,587,671	+		PP_1392	0.13	+0.7
1,587,672	-		PP_1392	0.13	-3.4
1,587,777	+		PP_1392	0.31	-2.3
1,587,888	+		PP_1392	0.49	-0.2
1,587,888	+		PP_1392	0.49	-3.1
1,587,946	+		PP_1392	0.58	-1.7
1,587,946	+		PP_1392	0.58	-0.0
1,587,946	+		PP_1392	0.58	-0.0
1,587,949	-		PP_1392	0.59	+0.3
1,587,949	-		PP_1392	0.59	-0.1
1,588,066	+		PP_1392	0.78	-2.4
1,588,067	-		PP_1392	0.78	-1.6
1,588,133	-				+1.4
1,588,188	+				-0.7
1,588,188	+				+1.1
1,588,189	-				-3.2
1,588,278	-				+0.4
1,588,302	+				+0.2
1,588,302	+				-1.4
1,588,302	+				-3.0
1,588,302	+				-0.3
1,588,302	+				+0.3
1,588,303	-				-0.4
1,588,303	-				+0.1
1,588,303	-				+1.4
1,588,305	+				-2.4