Strain Fitness in Pseudomonas putida KT2440 around PP_1370

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,558,047	+		PP_1368	0.87	-0.5
1,558,047	+		PP_1368	0.87	+0.6
1,558,048	-		PP_1368	0.87	+1.6
1,558,050	+		PP_1368	0.88	+0.0
1,558,051	-		PP_1368	0.88	-1.2
1,558,258	-		PP_1369	0.12	+0.1
1,558,286	+		PP_1369	0.16	-1.0
1,558,287	-		PP_1369	0.16	+1.3
1,558,454	-		PP_1369	0.39	-3.4
1,558,454	-		PP_1369	0.39	-0.7
1,558,454	-		PP_1369	0.39	+1.3
1,558,454	-		PP_1369	0.39	+0.1
1,558,611	+		PP_1369	0.60	+1.6
1,558,632	+		PP_1369	0.63	-2.9
1,558,632	+		PP_1369	0.63	+1.9
1,558,633	-		PP_1369	0.63	+0.5
1,558,633	-		PP_1369	0.63	+0.2
1,558,650	+		PP_1369	0.66	+0.5
1,558,695	+		PP_1369	0.72	-2.8
1,558,695	+		PP_1369	0.72	-0.0
1,558,695	+		PP_1369	0.72	+0.4
1,558,844	+				-1.1
1,558,858	-				-1.2
1,558,993	-				+1.6
1,559,001	-				-2.7
1,559,011	+				-2.5
1,559,011	+				-0.7
1,559,011	+				-1.1
1,559,011	+				-0.2
1,559,012	-				-0.3
1,559,012	-				-0.3
1,559,012	-				-1.0
1,559,022	+				-0.5
1,559,022	+				-0.5
1,559,022	+				-0.7
1,559,022	+				-2.1
1,559,023	-				+1.9
1,559,353	-		PP_1370	0.38	-3.0
1,559,353	-		PP_1370	0.38	-0.7
1,559,478	+		PP_1370	0.49	-2.7
1,559,478	+		PP_1370	0.49	-1.5
1,559,478	+		PP_1370	0.49	+0.3
1,559,478	+		PP_1370	0.49	+1.3
1,559,478	+		PP_1370	0.49	-3.1
1,559,478	+		PP_1370	0.49	+0.5
1,559,478	+		PP_1370	0.49	+0.5
1,559,478	+		PP_1370	0.49	-1.7
1,559,479	-		PP_1370	0.49	-0.4
1,559,479	-		PP_1370	0.49	-0.8
1,559,479	-		PP_1370	0.49	-0.9
1,559,479	-		PP_1370	0.49	+1.3
1,559,565	+		PP_1370	0.57	-0.2
1,559,565	+		PP_1370	0.57	-0.2
1,559,617	+		PP_1370	0.62	-1.5
1,559,632	+		PP_1370	0.63	+2.0
1,559,633	-		PP_1370	0.63	-1.8
1,559,701	+		PP_1370	0.69	-1.0
1,559,764	+		PP_1370	0.75	-2.1
1,559,765	-		PP_1370	0.75	-0.7
1,559,810	+		PP_1370	0.79	-2.0
1,559,810	+				+1.3
1,559,810	+		PP_1370	0.79	-0.9
1,559,878	-		PP_1370	0.85	-3.6
1,559,878	-		PP_1370	0.85	-1.2
1,559,884	+		PP_1370	0.85	+1.0
1,559,884	+		PP_1370	0.85	-3.3
1,559,884	+		PP_1370	0.85	-1.3
1,559,884	+		PP_1370	0.85	-1.0
1,559,885	-		PP_1370	0.85	-2.8
1,559,885	-		PP_1370	0.85	-1.8
1,559,937	+				-0.9
1,559,938	-				-0.7
1,559,938	-				-1.5
1,559,938	-				+0.7
1,559,980	+				-0.8
1,559,980	+				+0.5
1,559,981	-				-2.5
1,559,981	-				+0.1
1,559,981	-				+0.9
1,559,981	-				+1.8
1,559,984	+				-2.4
1,559,985	-				-1.2
1,559,985	-				+0.3
1,559,985	-				-0.9
1,559,985	-				-2.5
1,559,985	-				-3.2
1,559,985	-				-1.5
1,559,988	+				+0.3
1,559,988	+				-1.7
1,559,988	+				-0.8
1,559,989	-				+0.0
1,559,989	-				+1.3
1,559,989	-				-1.0
1,559,989	-				+0.4
1,559,989	-				+0.0
1,559,989	-				-1.6
1,559,989	-				+0.1
1,560,107	+				-3.6
1,560,107	+				-0.2
1,560,119	+				-2.4
1,560,119	+				-0.4
1,560,120	-				-2.0
1,560,120	-				-0.1
1,560,120	-				+0.3
1,560,130	+				+0.3
1,560,130	+				+0.1
1,560,131	-				-2.9
1,560,166	+				+0.7
1,560,167	-				-2.2
1,560,207	+				-2.0
1,560,207	+				-0.5