Strain Fitness in Pseudomonas putida KT2440 around PP_1286

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,469,166	+		PP_1285	0.33	-0.4
1,469,166	+		PP_1285	0.33	-1.2
1,469,166	+		PP_1285	0.33	-0.1
1,469,167	-		PP_1285	0.33	-1.6
1,469,167	-		PP_1285	0.33	-1.4
1,469,170	-		PP_1285	0.33	-1.8
1,469,229	+		PP_1285	0.37	-0.4
1,469,271	+		PP_1285	0.40	-3.6
1,469,271	+		PP_1285	0.40	-2.2
1,469,271	+		PP_1285	0.40	+1.2
1,469,274	-		PP_1285	0.40	-0.6
1,469,319	-		PP_1285	0.43	-0.3
1,469,430	+		PP_1285	0.51	+0.2
1,469,431	-		PP_1285	0.51	+1.1
1,469,511	+		PP_1285	0.57	-0.4
1,469,511	+		PP_1285	0.57	-2.7
1,469,511	+		PP_1285	0.57	-1.2
1,469,512	-		PP_1285	0.57	+0.3
1,469,512	-		PP_1285	0.57	-0.7
1,469,577	+		PP_1285	0.61	+0.4
1,469,577	+		PP_1285	0.61	-0.7
1,469,578	-		PP_1285	0.61	-2.7
1,469,578	-		PP_1285	0.61	+0.9
1,469,596	-		PP_1285	0.62	+1.7
1,469,701	-		PP_1285	0.70	-0.7
1,469,970	+		PP_1285	0.88	-0.4
1,469,970	+		PP_1285	0.88	-0.2
1,469,971	-		PP_1285	0.88	-0.3
1,470,105	+				+0.5
1,470,105	+				-3.1
1,470,106	-				-0.1
1,470,106	-				+1.8
1,470,110	-				-0.0
1,470,385	+		PP_1286	0.22	+0.8
1,470,673	-		PP_1286	0.46	-0.4
1,470,748	+		PP_1286	0.53	-1.7
1,470,748	+		PP_1286	0.53	+0.8
1,470,748	+		PP_1286	0.53	-1.2
1,470,749	-		PP_1286	0.53	-0.9
1,470,749	-		PP_1286	0.53	-2.2
1,470,749	-		PP_1286	0.53	+0.7
1,470,749	-		PP_1286	0.53	-1.6
1,470,757	+		PP_1286	0.54	-0.3
1,470,757	+		PP_1286	0.54	-3.6
1,470,758	-		PP_1286	0.54	+2.0
1,470,758	-		PP_1286	0.54	-1.4
1,470,758	-		PP_1286	0.54	-2.6
1,470,758	-		PP_1286	0.54	-1.6
1,471,036	+		PP_1286	0.77	-0.1
1,471,037	-		PP_1286	0.78	-1.2
1,471,233	+				+1.3
1,471,293	-				-2.2
1,471,496	+		PP_1287	0.11	-0.2
1,471,497	-		PP_1287	0.11	-2.6
1,471,497	-		PP_1287	0.11	-2.5
1,471,497	-		PP_1287	0.11	-0.3
1,471,497	-		PP_1287	0.11	-3.0
1,471,530	-				+0.2
1,471,530	-		PP_1287	0.13	-0.6
1,471,530	-		PP_1287	0.13	-0.8
1,471,533	-		PP_1287	0.13	-0.2
1,471,533	-		PP_1287	0.13	-0.8
1,471,548	-		PP_1287	0.14	+0.9
1,471,558	+		PP_1287	0.15	-0.6
1,471,559	-				+1.2
1,471,559	-		PP_1287	0.15	+0.3
1,471,559	-		PP_1287	0.15	+0.2
1,471,625	+		PP_1287	0.19	-2.4
1,471,625	+		PP_1287	0.19	+2.0
1,471,625	+		PP_1287	0.19	+0.5
1,471,625	+		PP_1287	0.19	-0.8
1,471,808	+		PP_1287	0.32	+0.2
1,471,808	+		PP_1287	0.32	+0.6
1,471,808	+		PP_1287	0.32	-1.4
1,471,809	-				+0.2
1,471,886	+		PP_1287	0.37	+1.2
1,471,886	+		PP_1287	0.37	-0.0
1,471,886	+		PP_1287	0.37	+1.1
1,471,887	-		PP_1287	0.37	+1.0
1,471,887	-		PP_1287	0.37	+1.1
1,472,188	+		PP_1287	0.57	-2.5