Strain Fitness in Pseudomonas putida KT2440 around PP_1285

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,467,959	+		PP_1284	0.50	-3.4
1,467,959	+		PP_1284	0.50	-0.1
1,468,094	-		PP_1284	0.60	-1.5
1,468,094	-		PP_1284	0.60	+0.7
1,468,094	-		PP_1284	0.60	-1.7
1,468,147	+		PP_1284	0.63	-2.0
1,468,148	-		PP_1284	0.63	-1.2
1,468,229	+		PP_1284	0.69	+2.7
1,468,230	-		PP_1284	0.69	-0.3
1,468,294	+		PP_1284	0.73	-2.5
1,468,294	+		PP_1284	0.73	+0.2
1,468,301	+		PP_1284	0.74	-2.1
1,468,302	-		PP_1284	0.74	-3.0
1,468,342	+		PP_1284	0.76	+1.6
1,468,459	+		PP_1284	0.84	-0.0
1,468,459	+		PP_1284	0.84	+0.5
1,468,460	-		PP_1284	0.84	+1.5
1,468,460	-		PP_1284	0.84	+1.0
1,468,486	+		PP_1284	0.86	-0.3
1,468,486	+		PP_1284	0.86	-0.1
1,468,709	+				-0.5
1,468,753	+				-2.4
1,469,077	-		PP_1285	0.27	+3.2
1,469,079	+		PP_1285	0.27	-1.3
1,469,166	+		PP_1285	0.33	-0.4
1,469,166	+		PP_1285	0.33	-1.2
1,469,166	+		PP_1285	0.33	-0.1
1,469,167	-		PP_1285	0.33	-1.6
1,469,167	-		PP_1285	0.33	-1.4
1,469,170	-		PP_1285	0.33	-1.8
1,469,229	+		PP_1285	0.37	-0.4
1,469,271	+		PP_1285	0.40	-3.6
1,469,271	+		PP_1285	0.40	-2.2
1,469,271	+		PP_1285	0.40	+1.2
1,469,274	-		PP_1285	0.40	-0.6
1,469,319	-		PP_1285	0.43	-0.3
1,469,430	+		PP_1285	0.51	+0.2
1,469,431	-		PP_1285	0.51	+1.1
1,469,511	+		PP_1285	0.57	-0.4
1,469,511	+		PP_1285	0.57	-2.7
1,469,511	+		PP_1285	0.57	-1.2
1,469,512	-		PP_1285	0.57	+0.3
1,469,512	-		PP_1285	0.57	-0.7
1,469,577	+		PP_1285	0.61	+0.4
1,469,577	+		PP_1285	0.61	-0.7
1,469,578	-		PP_1285	0.61	-2.7
1,469,578	-		PP_1285	0.61	+0.9
1,469,596	-		PP_1285	0.62	+1.7
1,469,701	-		PP_1285	0.70	-0.7
1,469,970	+		PP_1285	0.88	-0.4
1,469,970	+		PP_1285	0.88	-0.2
1,469,971	-		PP_1285	0.88	-0.3
1,470,105	+				+0.5
1,470,105	+				-3.1
1,470,106	-				-0.1
1,470,106	-				+1.8
1,470,110	-				-0.0
1,470,385	+		PP_1286	0.22	+0.8
1,470,673	-		PP_1286	0.46	-0.4
1,470,748	+		PP_1286	0.53	-1.7
1,470,748	+		PP_1286	0.53	+0.8
1,470,748	+		PP_1286	0.53	-1.2
1,470,749	-		PP_1286	0.53	-0.9
1,470,749	-		PP_1286	0.53	-2.2
1,470,749	-		PP_1286	0.53	+0.7
1,470,749	-		PP_1286	0.53	-1.6
1,470,757	+		PP_1286	0.54	-0.3
1,470,757	+		PP_1286	0.54	-3.6
1,470,758	-		PP_1286	0.54	+2.0
1,470,758	-		PP_1286	0.54	-1.4
1,470,758	-		PP_1286	0.54	-2.6
1,470,758	-		PP_1286	0.54	-1.6
1,471,036	+		PP_1286	0.77	-0.1
1,471,037	-		PP_1286	0.78	-1.2