Strain Fitness in Pseudomonas putida KT2440 around PP_1248

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,423,629	+		PP_5467	0.28	-1.3
1,423,665	+		PP_5467	0.31	-1.5
1,423,665	+		PP_5467	0.31	-1.2
1,423,727	+		PP_5467	0.36	-0.7
1,423,728	-		PP_5467	0.36	-2.3
1,423,761	+		PP_5467	0.39	-1.7
1,423,761	+		PP_5467	0.39	-2.8
1,423,761	+		PP_5467	0.39	+0.8
1,423,762	-		PP_5467	0.39	+0.3
1,423,762	-		PP_5467	0.39	+1.2
1,424,140	-		PP_5467	0.70	-3.0
1,424,148	+		PP_5467	0.71	-1.4
1,424,215	-		PP_5467	0.77	-2.4
1,424,226	+		PP_5467	0.77	+1.4
1,424,226	+		PP_5467	0.77	+0.1
1,424,227	-				-0.5
1,424,424	+				+0.7
1,424,424	+				-0.1
1,424,424	+				+0.9
1,424,425	-				+0.2
1,424,425	-				-2.3
1,424,425	-				-3.8
1,424,425	-				+0.6
1,424,425	-				+0.1
1,424,478	+				+1.3
1,424,479	-				+0.6
1,424,479	-				-1.7
1,424,556	+				+0.9
1,424,664	+				-0.7
1,424,664	+				-0.8
1,424,665	-				+1.1
1,424,665	-				+0.3
1,424,665	-				-0.4
1,424,735	+		PP_1248	0.18	+2.3
1,424,736	-		PP_1248	0.18	+0.5
1,424,736	-		PP_1248	0.18	+1.0
1,424,834	+		PP_1248	0.31	-1.7
1,424,834	+		PP_1248	0.31	-3.0
1,424,834	+		PP_1248	0.31	+0.7
1,424,835	-		PP_1248	0.31	-2.7
1,424,961	-		PP_1248	0.47	+1.6
1,424,961	-		PP_1248	0.47	-1.3
1,424,970	-		PP_1248	0.48	+0.2
1,424,970	-		PP_1248	0.48	+2.1
1,424,994	+		PP_1248	0.51	+0.3
1,424,995	-		PP_1248	0.52	+1.6
1,424,995	-		PP_1248	0.52	+2.1
1,425,011	+		PP_1248	0.54	-0.0
1,425,011	+		PP_1248	0.54	-1.7
1,425,011	+		PP_1248	0.54	+1.2
1,425,258	+		PP_1248	0.86	+0.6
1,425,258	+		PP_1248	0.86	-0.9
1,425,258	+		PP_1248	0.86	-2.6
1,425,258	+		PP_1248	0.86	-2.7
1,425,405	+				+0.1
1,425,488	+		PP_1249	0.42	+0.3
1,425,489	-		PP_1249	0.43	-2.5
1,425,489	-		PP_1249	0.43	+1.4
1,425,512	+		PP_1249	0.55	-0.2
1,425,512	+		PP_1249	0.55	-1.9
1,425,512	+		PP_1249	0.55	-1.5
1,425,512	+		PP_1249	0.55	+0.2
1,425,512	+		PP_1249	0.55	-0.3
1,425,512	+		PP_1249	0.55	-1.0
1,425,513	-		PP_1249	0.55	+0.5
1,425,513	-		PP_1249	0.55	+0.2
1,425,513	-		PP_1249	0.55	+0.1
1,425,513	-		PP_1249	0.55	+0.7
1,425,518	+		PP_1249	0.58	-0.2
1,425,577	+		PP_1249	0.89	+1.1
1,425,596	+				-1.0
1,425,597	-				+0.1
1,425,703	-				+0.1