Strain Fitness in Pseudomonas putida KT2440 around PP_1169

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,343,401	+		PP_1167	0.88	+1.5
1,343,402	-		PP_1167	0.88	+0.8
1,343,488	-				+0.7
1,343,488	-				+0.4
1,343,553	+				+0.9
1,343,554	-				-0.6
1,343,754	+		PP_1168	0.35	+0.5
1,343,754	+		PP_1168	0.35	-0.6
1,343,757	+		PP_1168	0.35	+1.0
1,343,757	+		PP_1168	0.35	+1.0
1,343,757	+		PP_1168	0.35	-0.5
1,343,757	+		PP_1168	0.35	+1.8
1,343,758	-		PP_1168	0.35	-1.6
1,343,758	-		PP_1168	0.35	-3.1
1,343,758	-		PP_1168	0.35	+0.0
1,343,758	-		PP_1168	0.35	+0.0
1,343,758	-		PP_1168	0.35	-0.2
1,343,758	-		PP_1168	0.35	+1.3
1,343,843	-		PP_1168	0.50	-2.3
1,343,843	-		PP_1168	0.50	+0.3
1,343,906	+		PP_1168	0.61	-2.9
1,343,906	+		PP_1168	0.61	+0.3
1,343,907	-		PP_1168	0.61	-0.3
1,343,965	-				+1.0
1,344,079	+				-0.7
1,344,079	+				-0.2
1,344,080	-				+0.7
1,344,148	-				-0.1
1,344,163	+				+0.2
1,344,183	+				+0.0
1,344,405	-		PP_1169	0.27	+1.6
1,344,405	-		PP_1169	0.27	+0.8
1,344,441	+		PP_1169	0.30	-1.4
1,344,441	+		PP_1169	0.30	+1.9
1,344,441	+		PP_1169	0.30	-2.6
1,344,442	-		PP_1169	0.30	+0.6
1,344,442	-		PP_1169	0.30	+0.9
1,344,442	-		PP_1169	0.30	+2.2
1,344,442	-		PP_1169	0.30	-1.1
1,344,444	+		PP_1169	0.31	+0.7
1,344,445	-		PP_1169	0.31	+0.7
1,344,445	-		PP_1169	0.31	+0.5
1,344,609	-		PP_1169	0.48	+2.6
1,344,609	-		PP_1169	0.48	+0.7
1,344,663	+		PP_1169	0.53	-2.7
1,344,663	+		PP_1169	0.53	-0.6
1,344,664	-		PP_1169	0.53	+0.9
1,344,664	-		PP_1169	0.53	+0.2
1,344,812	+		PP_1169	0.69	+0.5
1,344,813	-		PP_1169	0.69	+0.9
1,345,085	+				+0.5
1,345,140	+				+0.4
1,345,192	+				+0.1
1,345,297	+		PP_1170	0.13	+1.3
1,345,298	-		PP_1170	0.13	+0.5
1,345,298	-		PP_1170	0.13	-2.9
1,345,430	-		PP_1170	0.28	+0.0
1,345,475	-		PP_1170	0.33	-2.7
1,345,531	+		PP_1170	0.40	-0.2
1,345,579	+		PP_1170	0.45	+0.5
1,345,579	+		PP_1170	0.45	+1.5
1,345,579	+		PP_1170	0.45	-0.7
1,345,579	+		PP_1170	0.45	-2.7
1,345,579	+		PP_1170	0.45	-1.6
1,345,580	-				+0.4
1,345,580	-		PP_1170	0.45	+0.4
1,345,580	-		PP_1170	0.45	-1.6
1,345,980	-				+1.3