Strain Fitness in Pseudomonas putida KT2440 around PP_1146

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,314,048	+		PP_1145	0.79	-0.5
1,314,268	+				+1.0
1,314,269	-		PP_1145	0.86	-2.8
1,314,297	+		PP_1145	0.87	+2.2
1,314,297	+		PP_1145	0.87	-2.6
1,314,298	-		PP_1145	0.87	+0.4
1,314,298	-		PP_1145	0.87	+0.6
1,314,298	-		PP_1145	0.87	+0.2
1,314,403	+				+0.0
1,314,404	-				-1.2
1,314,523	+				+1.0
1,314,551	-				+2.3
1,314,551	-				-0.6
1,314,643	+				-2.5
1,314,689	+				+1.5
1,314,690	-				-1.7
1,314,690	-				+0.2
1,314,726	+				-0.1
1,314,756	+				+1.6
1,314,757	-				-2.5
1,314,928	+		PP_1146	0.17	+0.5
1,314,929	-		PP_1146	0.18	+0.0
1,315,075	-		PP_1146	0.39	+1.0
1,315,167	+		PP_1146	0.52	+2.0
1,315,167	+		PP_1146	0.52	+0.8
1,315,167	+		PP_1146	0.52	+0.7
1,315,167	+		PP_1146	0.52	-0.9
1,315,167	+		PP_1146	0.52	-1.0
1,315,167	+		PP_1146	0.52	-1.2
1,315,167	+		PP_1146	0.52	+2.0
1,315,168	-		PP_1146	0.52	+0.0
1,315,168	-		PP_1146	0.52	+2.2
1,315,168	-		PP_1146	0.52	-0.1
1,315,168	-		PP_1146	0.52	+0.1
1,315,168	-		PP_1146	0.52	-0.2
1,315,170	-		PP_1146	0.52	+0.4
1,315,302	+		PP_1146	0.71	+1.8
1,315,303	-		PP_1146	0.71	-2.9
1,315,303	-		PP_1146	0.71	+1.2
1,315,311	-		PP_1146	0.72	-0.2
1,315,399	+		PP_1146	0.85	+0.7
1,315,400	-		PP_1146	0.85	+2.1
1,315,412	+		PP_1146	0.87	+0.6
1,315,412	+		PP_1146	0.87	-0.5
1,315,413	-		PP_1146	0.87	-0.8
1,315,437	+				+0.3
1,315,437	+				+0.8
1,315,437	+				-2.9
1,315,438	-				+0.0
1,315,438	-				+1.0
1,315,438	-				+0.0
1,315,438	-				+1.6
1,315,524	+				+0.9
1,315,524	+				+1.0
1,315,553	+				-3.1
1,315,553	+				-2.8
1,315,553	+				+0.6
1,315,553	+				-0.2
1,315,553	+				+1.0
1,315,723	+		PP_1147	0.48	+1.5
1,315,723	+		PP_1147	0.48	-1.4
1,315,723	+		PP_1147	0.48	+0.1
1,315,724	-		PP_1147	0.48	-0.6
1,315,724	-		PP_1147	0.48	-0.9
1,315,789	-		PP_1147	0.68	-1.5
1,315,862	-		PP_1147	0.90	-2.9
1,316,224	-				+0.6
1,316,409	-				-0.4