Strain Fitness in Pseudomonas putida KT2440 around PP_1143

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,307,583	-				-0.1
1,307,618	-				+2.0
1,307,618	-				-1.8
1,307,618	-				+0.0
1,307,646	+				-0.9
1,307,646	+				-1.2
1,307,646	+				-1.8
1,307,647	-				-0.5
1,307,648	+				-0.3
1,307,648	+				+0.1
1,307,667	+				+2.2
1,307,667	+				+0.9
1,307,758	-				+1.0
1,307,758	-				+0.0
1,307,834	-				-1.3
1,307,904	+				-1.2
1,307,905	-				-1.8
1,308,002	-		PP_1142	0.24	+0.4
1,308,296	+				+0.3
1,308,363	+				+1.3
1,308,364	-				+0.3
1,308,364	-				+0.0
1,308,401	+				+1.8
1,308,401	+				+0.8
1,308,494	+				-3.0
1,308,495	-				+1.8
1,308,495	-				+0.2
1,308,677	+		PP_1143	0.22	+0.1
1,308,677	+		PP_1143	0.22	-2.2
1,308,677	+		PP_1143	0.22	+0.6
1,308,975	+		PP_1143	0.56	+1.2
1,308,975	+		PP_1143	0.56	+0.4
1,309,046	+		PP_1143	0.64	-1.5
1,309,047	-		PP_1143	0.64	+0.5
1,309,047	-		PP_1143	0.64	+1.1
1,309,047	-		PP_1143	0.64	+1.6
1,309,199	+		PP_1143	0.81	+1.5
1,309,199	+		PP_1143	0.81	+0.0
1,309,200	-		PP_1143	0.81	-1.8
1,309,200	-		PP_1143	0.81	+0.5
1,309,315	+				+0.7
1,309,344	-				+1.5
1,309,344	-				+0.2
1,309,443	+				+2.0
1,309,443	+				+0.0
1,309,456	-				+0.3
1,309,534	+		PP_1144	0.12	+0.6
1,309,647	+		PP_1144	0.17	-1.3
1,309,648	-		PP_1144	0.17	+0.7
1,309,820	+		PP_1144	0.24	+1.7
1,310,034	-		PP_1144	0.34	+0.0
1,310,088	+		PP_1144	0.36	-0.1
1,310,089	-		PP_1144	0.36	+2.3
1,310,089	-		PP_1144	0.36	-2.3
1,310,224	-		PP_1144	0.42	-2.0
1,310,284	+		PP_1144	0.45	-3.2
1,310,284	+		PP_1144	0.45	-1.8
1,310,284	+		PP_1144	0.45	+2.2
1,310,284	+		PP_1144	0.45	-1.7
1,310,285	-		PP_1144	0.45	-0.3
1,310,285	-		PP_1144	0.45	-1.6
1,310,285	-		PP_1144	0.45	-1.7
1,310,288	+		PP_1144	0.45	+1.3
1,310,288	+		PP_1144	0.45	-1.6
1,310,288	+		PP_1144	0.45	+1.1
1,310,288	+		PP_1144	0.45	+0.5
1,310,289	-		PP_1144	0.45	-0.2
1,310,289	-		PP_1144	0.45	+1.5
1,310,289	-		PP_1144	0.45	-1.4
1,310,289	-		PP_1144	0.45	+0.0
1,310,289	-		PP_1144	0.45	-1.0
1,310,289	-		PP_1144	0.45	+0.2
1,310,289	-		PP_1144	0.45	-0.3
1,310,289	-		PP_1144	0.45	+0.5
1,310,289	-		PP_1144	0.45	+0.2
1,310,289	-		PP_1144	0.45	-3.1
1,310,289	-		PP_1144	0.45	+1.0
1,310,289	-		PP_1144	0.45	+0.5
1,310,290	+		PP_1144	0.45	-2.8
1,310,290	+		PP_1144	0.45	-0.1
1,310,291	-		PP_1144	0.45	+0.4