Strain Fitness in Pseudomonas putida KT2440 around PP_1134

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,298,524	+				+1.1
1,298,524	+				-0.2
1,298,563	+				-1.1
1,298,700	+				+0.8
1,298,737	+		PP_1134	0.10	-0.6
1,298,737	+		PP_1134	0.10	-2.6
1,298,738	-		PP_1134	0.10	+0.8
1,298,777	-		PP_1134	0.13	-1.8
1,298,778	+		PP_1134	0.13	+0.1
1,298,778	+		PP_1134	0.13	-1.1
1,298,778	+		PP_1134	0.13	+0.0
1,298,779	-		PP_1134	0.13	-1.8
1,298,779	-		PP_1134	0.13	+0.0
1,298,779	-		PP_1134	0.13	+0.3
1,298,883	+		PP_1134	0.19	-1.8
1,298,883	+		PP_1134	0.19	+1.9
1,298,884	-		PP_1134	0.20	+2.2
1,298,961	+		PP_1134	0.24	+1.9
1,298,978	+		PP_1134	0.25	+0.3
1,298,978	+		PP_1134	0.25	+0.9
1,298,978	+		PP_1134	0.25	-0.6
1,298,978	+		PP_1134	0.25	-0.3
1,298,978	+		PP_1134	0.25	+0.3
1,298,978	+		PP_1134	0.25	+1.3
1,298,978	+		PP_1134	0.25	+1.4
1,298,978	+		PP_1134	0.25	+1.4
1,298,979	-		PP_1134	0.25	+1.0
1,298,979	-		PP_1134	0.25	+1.4
1,298,979	-		PP_1134	0.25	-0.2
1,298,979	-		PP_1134	0.25	+0.0
1,298,979	-		PP_1134	0.25	-2.8
1,298,979	-		PP_1134	0.25	+0.8
1,298,979	-		PP_1134	0.25	-2.3
1,298,979	-		PP_1134	0.25	-1.1
1,298,982	+		PP_1134	0.26	+0.9
1,298,982	+		PP_1134	0.26	-0.4
1,298,982	+		PP_1134	0.26	-1.2
1,298,982	+		PP_1134	0.26	+0.6
1,298,982	+		PP_1134	0.26	+0.3
1,298,982	+		PP_1134	0.26	+0.4
1,298,983	-		PP_1134	0.26	+2.2
1,298,983	-		PP_1134	0.26	-0.4
1,298,983	-		PP_1134	0.26	-3.2
1,299,103	-		PP_1134	0.33	+0.2
1,299,186	+		PP_1134	0.38	-1.1
1,299,186	+		PP_1134	0.38	-3.4
1,299,186	+		PP_1134	0.38	+0.4
1,299,187	-		PP_1134	0.38	-1.1
1,299,187	-		PP_1134	0.38	-0.6
1,299,214	-		PP_1134	0.40	+0.2
1,299,214	-		PP_1134	0.40	+2.6
1,299,225	+		PP_1134	0.41	+0.9
1,299,226	-		PP_1134	0.41	+1.3
1,299,226	-		PP_1134	0.41	+1.8
1,299,258	+		PP_1134	0.43	+0.5
1,299,258	+		PP_1134	0.43	+0.5
1,299,259	-		PP_1134	0.43	-2.1
1,299,259	-		PP_1134	0.43	+0.2
1,299,259	-		PP_1134	0.43	-0.6
1,299,339	+		PP_1134	0.48	+1.4
1,299,339	+		PP_1134	0.48	+0.8
1,299,339	+		PP_1134	0.48	-1.0
1,299,339	+		PP_1134	0.48	+1.2
1,299,340	-		PP_1134	0.48	-2.4
1,299,398	+		PP_1134	0.51	+1.5
1,299,399	-		PP_1134	0.52	-1.0
1,299,399	-		PP_1134	0.52	-0.5
1,299,399	-		PP_1134	0.52	+0.6
1,299,440	+		PP_1134	0.54	-0.2
1,299,440	+		PP_1134	0.54	+0.2
1,299,441	-		PP_1134	0.54	+0.0
1,299,586	-		PP_1134	0.63	-0.5
1,299,586	-		PP_1134	0.63	+0.8
1,299,669	+		PP_1134	0.68	+1.0
1,299,670	-		PP_1134	0.68	+1.1
1,299,922	-		PP_1134	0.84	-2.1
1,300,050	+				-0.2
1,300,050	+				+1.2
1,300,051	-				+0.9
1,300,173	-				+0.8
1,300,234	+				+0.4
1,300,234	+				+0.4
1,300,234	+				+1.0
1,300,235	-				+0.1
1,300,236	+				-1.1
1,300,236	+				-1.4
1,300,237	-				+0.4
1,300,237	-				-1.1
1,300,237	-				+0.6
1,300,237	-				+0.9
1,300,244	+				+1.7
1,300,245	-				+0.7
1,300,265	+				+0.9
1,300,303	+				+1.2
1,300,304	-				+0.7
1,300,304	-				+0.3
1,300,306	+				+1.8
1,300,360	+		PP_1135	0.11	+0.4
1,300,360	+		PP_1135	0.11	-1.8
1,300,360	+		PP_1135	0.11	+0.0
1,300,360	+		PP_1135	0.11	+1.0
1,300,360	+		PP_1135	0.11	-1.1
1,300,361	-		PP_1135	0.11	-0.3
1,300,361	-		PP_1135	0.11	-3.1
1,300,361	-		PP_1135	0.11	+0.6
1,300,361	-		PP_1135	0.11	+0.6
1,300,407	+		PP_1135	0.17	-2.3
1,300,407	+		PP_1135	0.17	-0.4
1,300,407	+		PP_1135	0.17	+1.3
1,300,407	+		PP_1135	0.17	-1.5
1,300,408	-		PP_1135	0.17	+0.9
1,300,408	-		PP_1135	0.17	-0.7
1,300,641	+		PP_1135	0.49	-2.1
1,300,642	-				+1.0
1,300,683	-		PP_1135	0.54	-0.9
1,300,918	-		PP_1135	0.86	+1.4
1,300,947	+		PP_1135	0.90	+1.0
1,301,029	+				+0.5
1,301,029	+				+1.3
1,301,030	-				+0.1
1,301,030	-				-0.8
1,301,046	-				-1.5
1,301,099	+				-0.4
1,301,114	-				-0.1
1,301,119	+				+2.6