Strain Fitness in Pseudomonas putida KT2440 around PP_1132

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,294,141	-				+1.9
1,294,141	-				-0.6
1,294,189	+		PP_1130	0.16	+1.0
1,294,311	+		PP_1130	0.56	+1.3
1,294,311	+		PP_1130	0.56	+1.2
1,294,311	+		PP_1130	0.56	-0.8
1,294,312	-		PP_1130	0.57	-0.5
1,294,312	-		PP_1130	0.57	+0.2
1,294,312	-		PP_1130	0.57	-0.5
1,294,312	-		PP_1130	0.57	+1.7
1,294,312	-		PP_1130	0.57	-3.3
1,294,329	+		PP_1130	0.62	-0.3
1,294,329	+		PP_1130	0.62	-0.5
1,294,329	+		PP_1130	0.62	-1.4
1,294,330	-		PP_1130	0.62	+0.2
1,294,330	-		PP_1130	0.62	+2.5
1,294,365	+		PP_1130	0.74	+1.0
1,294,365	+		PP_1130	0.74	+1.4
1,294,366	-		PP_1130	0.74	-0.1
1,294,366	-		PP_1130	0.74	-2.8
1,294,376	+		PP_1130	0.77	+0.9
1,294,376	+		PP_1130	0.77	+1.6
1,294,452	-				+1.8
1,294,504	+				+1.0
1,294,525	+				-2.9
1,294,525	+				+0.0
1,294,552	+				+1.0
1,294,553	-				-0.1
1,294,607	+		PP_1131	0.19	+0.0
1,294,607	+		PP_1131	0.19	+0.0
1,294,607	+		PP_1131	0.19	-1.2
1,294,608	-		PP_1131	0.19	+1.2
1,294,646	-		PP_1131	0.27	+0.2
1,294,828	-		PP_1131	0.66	+3.5
1,294,892	+		PP_1131	0.80	+1.4
1,294,957	-				+0.0
1,294,957	-				+2.6
1,294,957	-				+1.0
1,294,957	-				-0.7
1,294,988	+				-2.0
1,294,988	+				-0.1
1,294,989	-				+0.0
1,295,128	+				-0.9
1,295,157	+				-1.0
1,295,193	-		PP_1132	0.12	+1.8
1,295,193	-		PP_1132	0.12	-1.0
1,295,209	+		PP_1132	0.13	+1.5
1,295,210	-		PP_1132	0.13	+1.4
1,295,210	-		PP_1132	0.13	+1.1
1,295,384	+		PP_1132	0.28	+1.6
1,295,445	+		PP_1132	0.33	+0.3
1,295,445	+		PP_1132	0.33	-1.7
1,295,446	-		PP_1132	0.33	-0.4
1,295,510	-		PP_1132	0.38	+0.0
1,295,607	+		PP_1132	0.46	+0.6
1,295,607	+		PP_1132	0.46	+0.7
1,295,607	+		PP_1132	0.46	+0.3
1,295,607	+		PP_1132	0.46	+2.2
1,295,608	-		PP_1132	0.46	+0.3
1,295,608	-		PP_1132	0.46	-0.2
1,295,608	-		PP_1132	0.46	-0.0
1,295,608	-		PP_1132	0.46	+0.5
1,295,608	-		PP_1132	0.46	-1.3
1,295,706	+		PP_1132	0.55	+1.0
1,295,707	-		PP_1132	0.55	+0.4
1,295,896	-		PP_1132	0.71	+0.7
1,296,050	+		PP_1132	0.83	-1.6
1,296,098	+		PP_1132	0.87	+1.6
1,296,098	+		PP_1132	0.87	+0.6
1,296,117	+		PP_1132	0.89	+1.2
1,296,123	+		PP_1132	0.90	+1.1
1,296,124	-		PP_1132	0.90	-1.8
1,296,124	-		PP_1132	0.90	+0.1
1,296,124	-		PP_1132	0.90	+1.0
1,296,236	+				-2.4
1,296,236	+				-0.0
1,296,256	+				+0.6
1,296,257	-				-0.1
1,296,257	-				+0.5
1,296,273	+				+2.6
1,296,280	+				+0.2
1,296,280	+				-0.1
1,296,281	-				+0.1
1,296,281	-				+1.4
1,296,293	+				-1.0
1,296,360	+				-2.0
1,296,360	+				+2.0
1,296,360	+				+1.2
1,296,361	-				-2.9
1,296,361	-				-0.9
1,296,361	-				-0.7
1,296,401	+				+0.4
1,296,401	+				-0.3
1,296,402	-				+1.2
1,296,402	-				-1.6
1,296,402	-				+0.4
1,296,413	+				-0.2
1,296,446	-				-2.6
1,296,457	+				-0.2
1,296,480	-				+1.0
1,296,480	-				-1.2