Strain Fitness in Pseudomonas putida KT2440 around PP_1117

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,277,753	-				+1.7
1,277,769	+				+1.5
1,277,797	+				+1.0
1,277,798	-				-2.0
1,277,814	+				+2.0
1,277,897	-				+2.0
1,277,930	-				+0.0
1,277,965	+				+0.0
1,277,967	+				+0.7
1,277,967	+				-2.9
1,277,967	+				-0.8
1,277,967	+				+2.3
1,277,968	-				+2.0
1,277,968	-				+1.1
1,277,968	-				+1.1
1,278,039	+		PP_5465	0.36	+0.3
1,278,039	+		PP_5465	0.36	+2.4
1,278,039	+		PP_5465	0.36	+3.0
1,278,040	-		PP_5465	0.36	+2.5
1,278,057	-		PP_5465	0.44	-1.5
1,278,087	+		PP_5465	0.59	+2.6
1,278,097	-		PP_5465	0.63	-0.0
1,278,126	+		PP_5465	0.77	+0.6
1,278,127	-		PP_5465	0.78	+0.9
1,278,127	-		PP_5465	0.78	+2.1
1,278,132	+		PP_5465	0.80	+0.6
1,278,132	+		PP_5465	0.80	-2.1
1,278,133	-		PP_5465	0.80	+1.0
1,278,138	+		PP_5465	0.83	+0.2
1,278,138	+		PP_5465	0.83	+4.2
1,278,138	+		PP_5465	0.83	-3.0
1,278,139	-		PP_5465	0.83	+1.6
1,278,139	-		PP_5465	0.83	+0.5
1,278,139	-		PP_5465	0.83	+1.6
1,278,139	-		PP_5465	0.83	+0.6
1,278,139	-		PP_5465	0.83	+1.2
1,278,311	+				-0.3
1,278,311	+				+0.5
1,278,345	+				-0.2
1,278,352	+				+1.0
1,278,353	-				+1.7
1,278,406	+				+1.8
1,278,536	+				+0.9
1,278,536	+				-0.5
1,278,536	+				+0.1
1,278,537	-				+0.9
1,278,642	+				+0.7
1,278,661	-				+2.2
1,278,661	-				+1.5
1,278,661	-				+1.5
1,278,662	+				+1.6
1,278,673	-				+1.2
1,278,676	-				+1.7
1,278,832	-				+2.0
1,278,832	-				-1.0
1,278,847	+				-0.8
1,278,847	+				-1.0
1,278,847	+				+0.6
1,278,848	-				+0.5
1,278,848	-				+1.6
1,278,848	-				-0.7
1,278,879	-		PP_1117	0.11	+2.4
1,278,879	-		PP_1117	0.11	-1.0
1,278,926	+		PP_1117	0.15	+0.5
1,278,927	-		PP_1117	0.15	+0.5
1,278,927	-		PP_1117	0.15	+2.1
1,278,927	-		PP_1117	0.15	+1.2
1,278,953	+		PP_1117	0.17	+0.8
1,278,954	-		PP_1117	0.17	+1.3
1,278,954	-		PP_1117	0.17	+0.6
1,278,986	+		PP_1117	0.20	+2.0
1,278,986	+		PP_1117	0.20	-2.8
1,278,986	+		PP_1117	0.20	-2.3
1,278,987	-		PP_1117	0.20	-3.0
1,279,045	+		PP_1117	0.25	+0.7
1,279,046	-		PP_1117	0.25	+1.5
1,279,113	-		PP_1117	0.30	-2.4
1,279,151	+		PP_1117	0.33	+1.0
1,279,151	+		PP_1117	0.33	+0.6
1,279,151	+		PP_1117	0.33	+0.6
1,279,152	-		PP_1117	0.33	-1.5
1,279,152	-		PP_1117	0.33	-0.0
1,279,152	-		PP_1117	0.33	+0.6
1,279,157	+		PP_1117	0.33	+1.0
1,279,158	-				+0.0
1,279,193	+		PP_1117	0.36	-0.1
1,279,194	-		PP_1117	0.36	-1.3
1,279,211	-		PP_1117	0.38	-1.0
1,279,211	-		PP_1117	0.38	+0.7
1,279,211	-		PP_1117	0.38	+0.2
1,279,264	+		PP_1117	0.42	+0.7
1,279,264	+		PP_1117	0.42	+1.0
1,279,265	-		PP_1117	0.42	-0.8
1,279,288	+		PP_1117	0.44	+0.0
1,279,288	+		PP_1117	0.44	+1.7
1,279,288	+		PP_1117	0.44	+0.9
1,279,289	-		PP_1117	0.44	-1.3
1,279,365	-		PP_1117	0.50	+0.7
1,279,365	-		PP_1117	0.50	-0.4
1,279,395	+		PP_1117	0.52	+2.0
1,279,395	+		PP_1117	0.52	+1.6
1,279,404	+		PP_1117	0.53	+0.9
1,279,683	+		PP_1117	0.75	-2.4
1,279,719	-		PP_1117	0.78	-1.8
1,279,747	+		PP_1117	0.80	+1.0
1,279,963	-				-0.5
1,280,192	-				+0.4
1,280,255	-				+0.8
1,280,256	+				-1.0
1,280,256	+				-1.3
1,280,259	+				+1.0
1,280,260	-				+2.6
1,280,260	-				-1.5
1,280,260	-				-2.3
1,280,311	-				-1.1
1,280,311	-				+1.3
1,280,333	-				+1.4
1,280,372	-				+1.3
1,280,431	-				+1.1
1,280,464	-				-0.8
1,280,491	-				+0.6
1,280,543	-				+0.1
1,280,626	-				-0.2
1,280,645	+				+1.6
1,280,676	+		PP_5742	0.13	+0.8
1,280,684	+		PP_5742	0.14	+1.6
1,280,916	-		PP_5742	0.55	+1.0
1,280,936	+		PP_5742	0.58	-0.4
1,280,947	-		PP_5742	0.60	+2.1
1,280,975	-		PP_5742	0.65	+0.5
1,280,976	+		PP_5742	0.65	+0.8