Strain Fitness in Pseudomonas putida KT2440 around PP_1057

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,204,301	-				-3.9
1,204,327	+				-0.5
1,204,327	+				-0.8
1,204,328	-				-3.8
1,204,328	-				-0.1
1,204,328	-				-2.2
1,204,331	+				+0.8
1,204,331	+				-2.7
1,204,332	-				+0.0
1,204,332	-				-2.0
1,204,332	-				-0.6
1,204,332	-				-2.0
1,204,332	-				-0.6
1,204,332	-				-0.1
1,204,386	+				+0.4
1,204,386	+				+0.9
1,204,387	-				-1.9
1,204,398	+				-2.8
1,204,496	+				-0.3
1,204,497	-				-0.3
1,204,510	+				-0.2
1,204,510	+				+0.4
1,204,510	+				-0.4
1,204,592	+		PP_1056	0.17	+0.8
1,204,592	+		PP_1056	0.17	-2.2
1,204,593	-		PP_1056	0.17	+0.5
1,204,621	-		PP_1056	0.21	+1.1
1,204,812	-		PP_1056	0.46	-0.9
1,204,977	-		PP_1056	0.68	+0.3
1,204,977	-		PP_1056	0.68	-0.1
1,205,073	+		PP_1056	0.80	+1.3
1,205,074	-		PP_1056	0.80	-0.3
1,205,074	-		PP_1056	0.80	+0.3
1,205,074	-		PP_1056	0.80	-3.3
1,205,074	-		PP_1056	0.80	+2.3
1,205,097	+		PP_1056	0.83	-3.3
1,205,493	+		PP_1057	0.51	+0.1
1,205,493	+		PP_1057	0.51	-2.2
1,205,494	-		PP_1057	0.51	+1.6
1,205,494	-		PP_1057	0.51	-2.6
1,205,494	-		PP_1057	0.51	-3.5
1,205,494	-		PP_1057	0.51	+0.5
1,205,514	-		PP_1057	0.55	-0.9
1,205,514	-		PP_1057	0.55	-2.3
1,205,562	+		PP_1057	0.63	+0.4
1,205,563	-		PP_1057	0.64	-3.1
1,205,563	-		PP_1057	0.64	-1.9
1,205,563	-		PP_1057	0.64	-1.2
1,205,587	-		PP_1057	0.68	-3.0
1,205,587	-		PP_1057	0.68	-3.0
1,205,587	-		PP_1057	0.68	-0.6
1,205,587	-		PP_1057	0.68	-0.5
1,205,587	-		PP_1057	0.68	-2.3
1,205,762	-				+0.6
1,205,814	-				-0.6
1,205,818	-				-0.0
1,206,330	-		PP_1058	0.15	-1.2
1,206,373	-		PP_1058	0.17	-0.6
1,206,599	+		PP_1058	0.24	-0.5
1,206,600	-		PP_1058	0.24	+1.1
1,206,600	-		PP_1058	0.24	+1.8
1,206,601	+		PP_1058	0.24	+0.7
1,206,602	-		PP_1058	0.24	+0.3
1,206,602	-		PP_1058	0.24	-1.9
1,206,672	-		PP_1058	0.26	+1.1
1,206,672	-		PP_1058	0.26	-0.0
1,206,713	+		PP_1058	0.27	-0.2
1,206,749	+		PP_1058	0.29	+0.4
1,206,754	+		PP_1058	0.29	-1.3
1,206,754	+		PP_1058	0.29	-2.9
1,206,754	+		PP_1058	0.29	+1.1
1,206,754	+		PP_1058	0.29	-3.2
1,206,755	-		PP_1058	0.29	-0.6
1,206,755	-		PP_1058	0.29	-2.5
1,206,755	-		PP_1058	0.29	-3.3
1,206,755	-		PP_1058	0.29	-0.5
1,206,755	-		PP_1058	0.29	+0.5
1,206,758	+		PP_1058	0.29	-0.5
1,206,758	+		PP_1058	0.29	-2.7
1,206,758	+		PP_1058	0.29	-1.4
1,206,758	+		PP_1058	0.29	-0.3
1,206,758	+		PP_1058	0.29	-2.6
1,206,758	+		PP_1058	0.29	-1.9
1,206,759	-		PP_1058	0.29	+1.0
1,206,759	-		PP_1058	0.29	-0.0
1,206,759	-		PP_1058	0.29	+0.0
1,206,759	-		PP_1058	0.29	-2.8
1,206,759	-		PP_1058	0.29	-0.1
1,206,759	-		PP_1058	0.29	-2.8
1,206,759	-		PP_1058	0.29	-0.9
1,206,759	-		PP_1058	0.29	-0.4
1,206,759	-		PP_1058	0.29	-0.7
1,206,759	-		PP_1058	0.29	-0.8