Strain Fitness in Pseudomonas putida KT2440 around PP_1047

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,196,702	+		PP_1046	0.43	+0.7
1,196,714	-		PP_1046	0.44	+0.4
1,196,760	-		PP_1046	0.47	-2.0
1,196,786	-		PP_1046	0.48	-1.2
1,196,897	-		PP_1046	0.55	-2.3
1,196,967	-		PP_1046	0.59	-3.1
1,197,390	+		PP_1046	0.83	+0.8
1,197,391	-		PP_1046	0.83	+0.2
1,197,391	-		PP_1046	0.83	-0.7
1,197,421	+		PP_1046	0.84	-0.4
1,197,462	-		PP_1046	0.87	-1.8
1,197,462	-		PP_1046	0.87	-0.4
1,197,652	-				-0.4
1,197,652	-				-2.1
1,197,761	+				-1.8
1,197,761	+				+0.3
1,197,762	-				-2.8
1,197,880	+		PP_1047	0.13	-4.1
1,198,166	+		PP_1047	0.33	-0.8
1,198,266	-		PP_1047	0.40	+0.2
1,198,373	+		PP_1047	0.47	+0.2
1,198,374	-		PP_1047	0.47	-0.3
1,198,374	-		PP_1047	0.47	-0.1
1,198,462	+		PP_1047	0.53	-0.4
1,198,463	-		PP_1047	0.53	-0.7
1,198,730	+		PP_1047	0.72	+0.2
1,198,874	+				+1.2
1,198,874	+		PP_1047	0.81	+0.3
1,198,874	+		PP_1047	0.81	-1.8
1,198,875	-				+2.7
1,198,906	+		PP_1047	0.84	+0.4
1,198,948	-		PP_1047	0.87	-1.6
1,198,967	-		PP_1047	0.88	-0.7
1,198,967	-				+1.2
1,198,967	-		PP_1047	0.88	-1.4
1,199,008	+				-1.2
1,199,008	+				-2.0
1,199,009	-				-0.7
1,199,041	+				-0.1
1,199,042	-				+1.7
1,199,042	-				-0.0
1,199,140	+				-1.8
1,199,155	+				+0.0
1,199,156	-				-1.7
1,199,161	+				+1.1
1,199,524	+		PP_1048	0.31	+1.7
1,199,525	-		PP_1048	0.32	-0.1
1,199,644	+		PP_1048	0.41	+0.6