Strain Fitness in Pseudomonas putida KT2440 around PP_0976

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,112,937	+		PP_0973	0.78	+0.2
1,112,938	-		PP_0973	0.78	+1.2
1,112,938	-		PP_0973	0.78	+0.9
1,112,938	-		PP_0973	0.78	-1.1
1,113,018	+		PP_0973	0.86	+0.7
1,113,018	+		PP_0973	0.86	-1.9
1,113,018	+		PP_0973	0.86	-0.1
1,113,019	-		PP_0973	0.87	-0.2
1,113,219	+				-0.5
1,113,220	-				-1.9
1,113,220	-				-1.4
1,113,232	-				+0.0
1,113,232	-				-3.7
1,113,299	+				-0.8
1,113,299	+				-0.6
1,113,300	-				-2.5
1,113,319	+				-0.9
1,113,319	+				+0.6
1,113,319	+				-2.2
1,113,420	+				-0.0
1,113,421	-				+0.1
1,113,421	-				-1.6
1,113,424	+				-2.4
1,113,424	+				-3.0
1,113,424	+				+0.9
1,113,425	-				+1.5
1,113,425	-				+0.2
1,113,425	-				+1.2
1,113,428	+				+0.4
1,113,428	+				-0.2
1,113,428	+				+1.2
1,113,428	+				-0.6
1,113,429	-				-1.9
1,113,429	-				-2.8
1,113,479	-				-2.6
1,113,491	-				-3.3
1,113,804	-				+1.2
1,113,804	-				+1.6
1,113,867	+				+1.5
1,113,868	-				-1.9
1,113,868	-				-0.0
1,113,965	-		PP_0976	0.12	-0.8
1,113,965	-		PP_0976	0.12	-0.5
1,114,048	+		PP_0976	0.20	-2.1
1,114,049	-		PP_0976	0.21	-0.8
1,114,430	+		PP_0976	0.60	-0.1
1,114,430	+		PP_0976	0.60	-0.8
1,114,431	-		PP_0976	0.61	-2.7
1,114,446	-		PP_0976	0.62	-1.1
1,114,540	+		PP_0976	0.72	-0.4
1,114,540	+		PP_0976	0.72	-0.1
1,114,550	+		PP_0976	0.73	-1.0
1,114,550	+		PP_0976	0.73	-1.4
1,114,551	-		PP_0976	0.73	-2.7
1,114,551	-		PP_0976	0.73	-0.6
1,114,584	-		PP_0976	0.77	+0.1
1,114,584	-		PP_0976	0.77	-2.7
1,114,584	-		PP_0976	0.77	-0.5
1,114,822	+				+0.8
1,114,822	+				+2.2
1,114,822	+				+0.5
1,114,823	-				-2.8
1,114,824	+				+0.1
1,114,824	+				-0.6
1,114,824	+				+0.4
1,114,956	+				+0.8
1,114,956	+				+0.1
1,114,979	+				-2.9
1,114,979	+				-0.4