Strain Fitness in Pseudomonas putida KT2440 around PP_0818

Experiment: P. putida PUT 7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0817 and PP_0818 are separated by 113 nucleotidesPP_0818 and PP_0819 are separated by 161 nucleotidesPP_0819 and PP_0820 are separated by 192 nucleotides PP_0817: PP_0817 - aminotransferase, at 955,359 to 956,567 _0817 PP_0818: PP_0818 - conserved protein of unknown function, at 956,681 to 957,808 _0818 PP_0819: PP_0819 - conserved ferredoxin-like protein of unknown function, at 957,970 to 958,353 _0819 PP_0820: PP_0820 - GCN5-related N-acetyltransferase, at 958,546 to 959,109 _0820 Position (kb) 956 957 958Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 955.727 kb on + strand, within PP_0817at 955.768 kb on - strand, within PP_0817at 955.965 kb on + strand, within PP_0817at 955.965 kb on + strand, within PP_0817at 955.966 kb on - strand, within PP_0817at 955.966 kb on - strand, within PP_0817at 955.966 kb on - strand, within PP_0817at 955.972 kb on + strand, within PP_0817at 955.972 kb on + strand, within PP_0817at 955.973 kb on - strand, within PP_0817at 955.973 kb on - strand, within PP_0817at 955.995 kb on + strand, within PP_0817at 956.094 kb on + strand, within PP_0817at 956.094 kb on + strand, within PP_0817at 956.094 kb on + strand, within PP_0817at 956.172 kb on + strand, within PP_0817at 956.172 kb on + strand, within PP_0817at 956.172 kb on + strand, within PP_0817at 956.343 kb on + strand, within PP_0817at 956.343 kb on + strand, within PP_0817at 956.343 kb on + strand, within PP_0817at 956.343 kb on + strand, within PP_0817at 956.370 kb on + strand, within PP_0817at 956.458 kb on - strandat 956.565 kb on + strandat 956.645 kb on - strandat 956.782 kb on + strandat 956.996 kb on + strand, within PP_0818at 956.997 kb on - strand, within PP_0818at 957.068 kb on + strand, within PP_0818at 957.240 kb on + strand, within PP_0818at 957.252 kb on + strand, within PP_0818at 957.252 kb on + strand, within PP_0818at 957.252 kb on + strand, within PP_0818at 957.252 kb on + strand, within PP_0818at 957.253 kb on - strand, within PP_0818at 957.253 kb on - strand, within PP_0818at 957.253 kb on - strand, within PP_0818at 957.253 kb on - strand, within PP_0818at 957.253 kb on - strand, within PP_0818at 957.253 kb on - strand, within PP_0818at 957.253 kb on - strand, within PP_0818at 957.288 kb on + strand, within PP_0818at 957.288 kb on + strand, within PP_0818at 957.289 kb on - strand, within PP_0818at 957.317 kb on - strand, within PP_0818at 957.317 kb on - strand, within PP_0818at 957.330 kb on - strand, within PP_0818at 957.330 kb on - strand, within PP_0818at 957.330 kb on - strand, within PP_0818at 957.333 kb on + strand, within PP_0818at 957.333 kb on + strand, within PP_0818at 957.334 kb on - strand, within PP_0818at 957.334 kb on - strand, within PP_0818at 957.334 kb on - strand, within PP_0818at 957.334 kb on - strand, within PP_0818at 957.341 kb on + strand, within PP_0818at 957.342 kb on - strand, within PP_0818at 957.409 kb on - strand, within PP_0818at 957.409 kb on - strand, within PP_0818at 957.596 kb on + strand, within PP_0818at 957.596 kb on + strand, within PP_0818at 957.629 kb on + strand, within PP_0818at 957.630 kb on - strand, within PP_0818at 957.630 kb on - strand, within PP_0818at 957.646 kb on + strand, within PP_0818at 957.646 kb on + strand, within PP_0818at 957.646 kb on + strand, within PP_0818at 957.646 kb on + strand, within PP_0818at 957.646 kb on + strand, within PP_0818at 957.646 kb on + strand, within PP_0818at 957.646 kb on + strand, within PP_0818at 957.653 kb on + strand, within PP_0818at 957.654 kb on - strand, within PP_0818at 957.654 kb on - strand, within PP_0818at 957.660 kb on + strand, within PP_0818at 957.712 kb on + strandat 957.744 kb on - strandat 957.762 kb on + strandat 957.762 kb on + strandat 957.763 kb on - strandat 957.763 kb on - strandat 957.791 kb on + strandat 957.893 kb on - strandat 957.979 kb on + strandat 957.979 kb on + strandat 957.980 kb on - strandat 957.980 kb on - strandat 957.980 kb on - strandat 957.981 kb on + strandat 957.982 kb on - strandat 957.982 kb on - strandat 958.064 kb on + strand, within PP_0819at 958.065 kb on - strand, within PP_0819at 958.085 kb on + strand, within PP_0819at 958.086 kb on - strand, within PP_0819at 958.086 kb on - strand, within PP_0819at 958.086 kb on - strand, within PP_0819at 958.086 kb on - strand, within PP_0819at 958.182 kb on + strand, within PP_0819at 958.279 kb on + strand, within PP_0819at 958.357 kb on - strandat 958.357 kb on - strandat 958.508 kb on - strandat 958.741 kb on + strand, within PP_0820at 958.742 kb on - strand, within PP_0820at 958.774 kb on + strand, within PP_0820at 958.774 kb on + strand, within PP_0820at 958.775 kb on - strand, within PP_0820

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1
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955,727 + PP_0817 0.30 -3.6
955,768 - PP_0817 0.34 -3.5
955,965 + PP_0817 0.50 +1.6
955,965 + PP_0817 0.50 +1.3
955,966 - PP_0817 0.50 -2.4
955,966 - PP_0817 0.50 +1.0
955,966 - PP_0817 0.50 +0.7
955,972 + PP_0817 0.51 +0.9
955,972 + PP_0817 0.51 -2.2
955,973 - PP_0817 0.51 -1.7
955,973 - PP_0817 0.51 -3.6
955,995 + PP_0817 0.53 -0.5
956,094 + PP_0817 0.61 -0.1
956,094 + PP_0817 0.61 +1.2
956,094 + PP_0817 0.61 +1.1
956,172 + PP_0817 0.67 +0.2
956,172 + PP_0817 0.67 -1.6
956,172 + PP_0817 0.67 -3.6
956,343 + PP_0817 0.81 +0.6
956,343 + PP_0817 0.81 +0.0
956,343 + PP_0817 0.81 +0.0
956,343 + PP_0817 0.81 -3.0
956,370 + PP_0817 0.84 +0.9
956,458 - +1.5
956,565 + -1.0
956,645 - -0.5
956,782 + -1.6
956,996 + PP_0818 0.28 -2.6
956,997 - PP_0818 0.28 -0.7
957,068 + PP_0818 0.34 +0.7
957,240 + PP_0818 0.50 -0.8
957,252 + PP_0818 0.51 -2.0
957,252 + PP_0818 0.51 +1.1
957,252 + PP_0818 0.51 +0.3
957,252 + PP_0818 0.51 +0.9
957,253 - PP_0818 0.51 -0.7
957,253 - PP_0818 0.51 -0.5
957,253 - PP_0818 0.51 +0.1
957,253 - PP_0818 0.51 -0.1
957,253 - PP_0818 0.51 +2.9
957,253 - PP_0818 0.51 -1.0
957,253 - PP_0818 0.51 +0.5
957,288 + PP_0818 0.54 +0.5
957,288 + PP_0818 0.54 -1.0
957,289 - PP_0818 0.54 -0.6
957,317 - PP_0818 0.56 -0.2
957,317 - PP_0818 0.56 +0.5
957,330 - PP_0818 0.58 -0.0
957,330 - PP_0818 0.58 -3.7
957,330 - PP_0818 0.58 -1.0
957,333 + PP_0818 0.58 -0.6
957,333 + PP_0818 0.58 -3.4
957,334 - PP_0818 0.58 +0.1
957,334 - PP_0818 0.58 -0.9
957,334 - PP_0818 0.58 +1.0
957,334 - PP_0818 0.58 -0.7
957,341 + PP_0818 0.59 +0.6
957,342 - PP_0818 0.59 -2.7
957,409 - PP_0818 0.65 +0.1
957,409 - PP_0818 0.65 -0.4
957,596 + PP_0818 0.81 -1.9
957,596 + PP_0818 0.81 -0.4
957,629 + PP_0818 0.84 -0.7
957,630 - PP_0818 0.84 -0.1
957,630 - PP_0818 0.84 -3.1
957,646 + PP_0818 0.86 +0.8
957,646 + PP_0818 0.86 +0.2
957,646 + PP_0818 0.86 +1.1
957,646 + PP_0818 0.86 -1.0
957,646 + PP_0818 0.86 +0.1
957,646 + PP_0818 0.86 -1.6
957,646 + PP_0818 0.86 -0.9
957,653 + PP_0818 0.86 -0.4
957,654 - PP_0818 0.86 -1.0
957,654 - PP_0818 0.86 -2.6
957,660 + PP_0818 0.87 -0.2
957,712 + +0.3
957,744 - -1.0
957,762 + -2.2
957,762 + +1.3
957,763 - -0.3
957,763 - +0.7
957,791 + -0.7
957,893 - -0.0
957,979 + -3.1
957,979 + -0.2
957,980 - -1.5
957,980 - -0.1
957,980 - -1.1
957,981 + +0.5
957,982 - +0.1
957,982 - -2.5
958,064 + PP_0819 0.24 -1.8
958,065 - PP_0819 0.25 -0.4
958,085 + PP_0819 0.30 +0.0
958,086 - PP_0819 0.30 -2.2
958,086 - PP_0819 0.30 +0.8
958,086 - PP_0819 0.30 +0.3
958,086 - PP_0819 0.30 -2.7
958,182 + PP_0819 0.55 +2.2
958,279 + PP_0819 0.80 +1.0
958,357 - -0.2
958,357 - +0.3
958,508 - -2.1
958,741 + PP_0820 0.35 +0.1
958,742 - PP_0820 0.35 -0.6
958,774 + PP_0820 0.40 -0.1
958,774 + PP_0820 0.40 -1.7
958,775 - PP_0820 0.41 +1.2

Or see this region's nucleotide sequence