Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0725 and PP_0726 are separated by 468 nucleotides PP_0726 and PP_0727 overlap by 4 nucleotides PP_0727 and PP_0728 overlap by 4 nucleotides
PP_0725: PP_0725 - conserved hypothetical TPR repeat protein, at 841,328 to 843,049
_0725
PP_0726: PP_0726 - Transferase, at 843,518 to 844,243
_0726
PP_0727: PP_0727 - conserved protein of unknown function, at 844,240 to 844,842
_0727
PP_0728: PP_0728 - conserved protein of unknown function, at 844,839 to 846,008
_0728
Position (kb) 843
844
845 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 842.538 kb on - strand, within PP_0725 at 842.622 kb on - strand, within PP_0725 at 842.622 kb on - strand, within PP_0725 at 842.635 kb on - strand, within PP_0725 at 842.635 kb on - strand, within PP_0725 at 842.653 kb on - strand, within PP_0725 at 842.833 kb on - strand, within PP_0725 at 842.833 kb on - strand, within PP_0725 at 842.833 kb on - strand, within PP_0725 at 842.833 kb on - strand, within PP_0725 at 842.894 kb on - strand at 842.896 kb on - strand at 842.896 kb on - strand at 842.923 kb on - strand at 842.923 kb on - strand at 842.923 kb on - strand at 843.037 kb on - strand at 843.037 kb on - strand at 843.050 kb on - strand at 843.060 kb on - strand at 843.060 kb on - strand at 843.060 kb on - strand at 843.062 kb on - strand at 843.062 kb on - strand at 843.062 kb on - strand at 843.134 kb on + strand at 843.134 kb on + strand at 843.156 kb on - strand at 843.219 kb on + strand at 843.227 kb on - strand at 843.241 kb on - strand at 843.275 kb on + strand at 843.275 kb on + strand at 843.275 kb on + strand at 843.276 kb on - strand at 843.276 kb on - strand at 843.276 kb on - strand at 843.276 kb on - strand at 843.288 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.314 kb on + strand at 843.355 kb on - strand at 843.355 kb on - strand at 843.459 kb on - strand at 843.480 kb on + strand at 843.492 kb on + strand at 843.531 kb on + strand at 843.543 kb on + strand at 843.543 kb on + strand at 843.543 kb on + strand at 843.543 kb on + strand at 843.545 kb on + strand at 843.636 kb on - strand, within PP_0726 at 843.741 kb on + strand, within PP_0726 at 843.741 kb on + strand, within PP_0726 at 843.741 kb on + strand, within PP_0726 at 843.742 kb on - strand at 843.742 kb on - strand, within PP_0726 at 843.742 kb on - strand, within PP_0726 at 843.784 kb on + strand, within PP_0726 at 843.806 kb on + strand, within PP_0726 at 843.879 kb on + strand, within PP_0726 at 843.892 kb on + strand, within PP_0726 at 843.907 kb on + strand, within PP_0726 at 843.907 kb on + strand, within PP_0726 at 843.907 kb on + strand, within PP_0726 at 843.908 kb on - strand, within PP_0726 at 843.911 kb on + strand, within PP_0726 at 843.911 kb on + strand, within PP_0726 at 843.911 kb on + strand, within PP_0726 at 843.912 kb on - strand, within PP_0726 at 843.912 kb on - strand, within PP_0726 at 843.920 kb on + strand, within PP_0726 at 843.920 kb on + strand, within PP_0726 at 843.920 kb on + strand, within PP_0726 at 843.923 kb on + strand, within PP_0726 at 843.923 kb on + strand, within PP_0726 at 843.924 kb on - strand, within PP_0726 at 843.924 kb on - strand, within PP_0726 at 843.924 kb on - strand, within PP_0726 at 843.924 kb on - strand, within PP_0726 at 843.951 kb on + strand, within PP_0726 at 843.951 kb on + strand, within PP_0726 at 843.951 kb on + strand, within PP_0726 at 843.952 kb on - strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.956 kb on - strand, within PP_0726 at 843.956 kb on - strand, within PP_0726 at 843.956 kb on - strand, within PP_0726 at 843.998 kb on + strand, within PP_0726 at 843.998 kb on + strand, within PP_0726 at 844.039 kb on - strand, within PP_0726 at 844.142 kb on + strand, within PP_0726 at 844.143 kb on - strand, within PP_0726 at 844.143 kb on - strand, within PP_0726 at 844.159 kb on + strand, within PP_0726 at 844.159 kb on + strand, within PP_0726 at 844.166 kb on + strand, within PP_0726 at 844.167 kb on - strand, within PP_0726 at 844.202 kb on + strand at 844.202 kb on + strand at 844.298 kb on - strand at 844.329 kb on + strand, within PP_0727 at 844.349 kb on + strand, within PP_0727 at 844.350 kb on - strand, within PP_0727 at 844.350 kb on - strand, within PP_0727 at 844.350 kb on - strand, within PP_0727 at 844.384 kb on + strand, within PP_0727 at 844.385 kb on - strand, within PP_0727 at 844.387 kb on + strand, within PP_0727 at 844.388 kb on - strand, within PP_0727 at 844.388 kb on - strand, within PP_0727 at 844.422 kb on - strand, within PP_0727 at 844.431 kb on - strand, within PP_0727 at 844.431 kb on - strand, within PP_0727 at 844.480 kb on + strand, within PP_0727 at 844.480 kb on + strand, within PP_0727 at 844.480 kb on + strand, within PP_0727 at 844.481 kb on - strand at 844.481 kb on - strand, within PP_0727 at 844.481 kb on - strand, within PP_0727 at 844.481 kb on - strand, within PP_0727 at 844.481 kb on - strand, within PP_0727 at 844.481 kb on - strand, within PP_0727 at 844.528 kb on + strand, within PP_0727 at 844.528 kb on + strand, within PP_0727 at 844.529 kb on - strand, within PP_0727 at 844.547 kb on - strand, within PP_0727 at 844.547 kb on - strand, within PP_0727 at 844.657 kb on - strand, within PP_0727 at 844.691 kb on - strand, within PP_0727 at 844.725 kb on - strand, within PP_0727 at 844.751 kb on - strand, within PP_0727 at 844.751 kb on - strand, within PP_0727 at 844.855 kb on - strand at 844.855 kb on - strand at 844.855 kb on - strand at 844.856 kb on + strand at 844.899 kb on + strand at 844.900 kb on - strand at 844.931 kb on + strand at 844.970 kb on + strand, within PP_0728 at 844.970 kb on + strand, within PP_0728 at 844.970 kb on + strand, within PP_0728 at 844.970 kb on + strand, within PP_0728 at 844.971 kb on - strand, within PP_0728 at 844.971 kb on - strand, within PP_0728 at 844.971 kb on - strand, within PP_0728 at 844.971 kb on - strand, within PP_0728 at 845.076 kb on + strand, within PP_0728 at 845.077 kb on - strand, within PP_0728 at 845.077 kb on - strand, within PP_0728 at 845.179 kb on - strand, within PP_0728 at 845.217 kb on + strand, within PP_0728
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 842,538 - PP_0725 0.70 +1.6 842,622 - PP_0725 0.75 -1.3 842,622 - PP_0725 0.75 +0.3 842,635 - PP_0725 0.76 -1.3 842,635 - PP_0725 0.76 -1.5 842,653 - PP_0725 0.77 +2.0 842,833 - PP_0725 0.87 +0.7 842,833 - PP_0725 0.87 -2.2 842,833 - PP_0725 0.87 +1.3 842,833 - PP_0725 0.87 -1.3 842,894 - -0.0 842,896 - +1.1 842,896 - -1.3 842,923 - -1.7 842,923 - -0.3 842,923 - +0.1 843,037 - -2.0 843,037 - +0.8 843,050 - -4.3 843,060 - -2.8 843,060 - +1.0 843,060 - -0.1 843,062 - +0.9 843,062 - -1.9 843,062 - -2.0 843,134 + +1.1 843,134 + -1.6 843,156 - +0.0 843,219 + -3.2 843,227 - -0.7 843,241 - -1.2 843,275 + -1.5 843,275 + +1.4 843,275 + -1.5 843,276 - -1.7 843,276 - +1.9 843,276 - +0.9 843,276 - -2.0 843,288 + +0.4 843,312 + +0.7 843,312 + -2.7 843,312 + +0.7 843,312 + -2.2 843,312 + +0.8 843,312 + +0.9 843,312 + -1.4 843,312 + -0.1 843,313 - -1.7 843,313 - -0.9 843,313 - -2.4 843,313 - -1.3 843,313 - -0.5 843,313 - -0.2 843,314 + -0.3 843,355 - +0.3 843,355 - -1.0 843,459 - -0.8 843,480 + +1.1 843,492 + -1.0 843,531 + -0.4 843,543 + -1.2 843,543 + -2.0 843,543 + +0.2 843,543 + -1.8 843,545 + -2.7 843,636 - PP_0726 0.16 +0.7 843,741 + PP_0726 0.31 -2.0 843,741 + PP_0726 0.31 -1.9 843,741 + PP_0726 0.31 +0.7 843,742 - +2.3 843,742 - PP_0726 0.31 -1.3 843,742 - PP_0726 0.31 -1.0 843,784 + PP_0726 0.37 +0.6 843,806 + PP_0726 0.40 -0.7 843,879 + PP_0726 0.50 +1.6 843,892 + PP_0726 0.52 -3.2 843,907 + PP_0726 0.54 -0.9 843,907 + PP_0726 0.54 +0.8 843,907 + PP_0726 0.54 -0.2 843,908 - PP_0726 0.54 +0.0 843,911 + PP_0726 0.54 -2.2 843,911 + PP_0726 0.54 -1.7 843,911 + PP_0726 0.54 -1.6 843,912 - PP_0726 0.54 +1.1 843,912 - PP_0726 0.54 -2.2 843,920 + PP_0726 0.55 +0.9 843,920 + PP_0726 0.55 -2.9 843,920 + PP_0726 0.55 -0.7 843,923 + PP_0726 0.56 -0.2 843,923 + PP_0726 0.56 -0.6 843,924 - PP_0726 0.56 +0.6 843,924 - PP_0726 0.56 -0.4 843,924 - PP_0726 0.56 -0.2 843,924 - PP_0726 0.56 -3.8 843,951 + PP_0726 0.60 +1.7 843,951 + PP_0726 0.60 -1.2 843,951 + PP_0726 0.60 -2.6 843,952 - PP_0726 0.60 -3.3 843,955 + PP_0726 0.60 -1.0 843,955 + PP_0726 0.60 -0.6 843,955 + PP_0726 0.60 -1.5 843,955 + PP_0726 0.60 -0.3 843,955 + PP_0726 0.60 -0.1 843,956 - PP_0726 0.60 +0.2 843,956 - PP_0726 0.60 -1.1 843,956 - PP_0726 0.60 -1.9 843,998 + PP_0726 0.66 -0.8 843,998 + PP_0726 0.66 -1.9 844,039 - PP_0726 0.72 -3.3 844,142 + PP_0726 0.86 -2.9 844,143 - PP_0726 0.86 -3.1 844,143 - PP_0726 0.86 -0.7 844,159 + PP_0726 0.88 -3.2 844,159 + PP_0726 0.88 -2.2 844,166 + PP_0726 0.89 +0.1 844,167 - PP_0726 0.89 +0.3 844,202 + +0.1 844,202 + +1.2 844,298 - +0.4 844,329 + PP_0727 0.15 +0.1 844,349 + PP_0727 0.18 -2.0 844,350 - PP_0727 0.18 +0.3 844,350 - PP_0727 0.18 -3.4 844,350 - PP_0727 0.18 -0.3 844,384 + PP_0727 0.24 +0.7 844,385 - PP_0727 0.24 +1.8 844,387 + PP_0727 0.24 +0.5 844,388 - PP_0727 0.25 -3.8 844,388 - PP_0727 0.25 +0.3 844,422 - PP_0727 0.30 -3.6 844,431 - PP_0727 0.32 +0.9 844,431 - PP_0727 0.32 +0.1 844,480 + PP_0727 0.40 +0.4 844,480 + PP_0727 0.40 +0.3 844,480 + PP_0727 0.40 -0.1 844,481 - +0.3 844,481 - PP_0727 0.40 -2.0 844,481 - PP_0727 0.40 -0.4 844,481 - PP_0727 0.40 +1.0 844,481 - PP_0727 0.40 +0.4 844,481 - PP_0727 0.40 -1.2 844,528 + PP_0727 0.48 +0.8 844,528 + PP_0727 0.48 -1.1 844,529 - PP_0727 0.48 +0.4 844,547 - PP_0727 0.51 -0.2 844,547 - PP_0727 0.51 -0.4 844,657 - PP_0727 0.69 -0.2 844,691 - PP_0727 0.75 -2.3 844,725 - PP_0727 0.80 -2.3 844,751 - PP_0727 0.85 -0.7 844,751 - PP_0727 0.85 -0.0 844,855 - -1.3 844,855 - -1.1 844,855 - +2.0 844,856 + -3.7 844,899 + -0.5 844,900 - +0.0 844,931 + -2.5 844,970 + PP_0728 0.11 -1.2 844,970 + PP_0728 0.11 -0.9 844,970 + PP_0728 0.11 +0.6 844,970 + PP_0728 0.11 +0.6 844,971 - PP_0728 0.11 -1.3 844,971 - PP_0728 0.11 -1.6 844,971 - PP_0728 0.11 -3.5 844,971 - PP_0728 0.11 +0.7 845,076 + PP_0728 0.20 -0.3 845,077 - PP_0728 0.20 +0.5 845,077 - PP_0728 0.20 -1.7 845,179 - PP_0728 0.29 -2.0 845,217 + PP_0728 0.32 -0.9
Or see this region's nucleotide sequence