Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0708 and PP_0709 are separated by 13 nucleotides PP_0709 and PP_0710 are separated by 92 nucleotides PP_0710 and PP_0711 are separated by 211 nucleotides
PP_0708: PP_0708 - putative Betaine-aldehyde dehydrogenase, at 823,173 to 824,603
_0708
PP_0709: PP_0709 - Transporter, NCS1 nucleoside transporter family, at 824,617 to 826,116
_0709
PP_0710: PP_0710 - conserved protein of unknown function, at 826,209 to 826,598
_0710
PP_0711: PP_0711 - putative hydrolase, at 826,810 to 827,430
_0711
Position (kb) 824
825
826
827 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 824.047 kb on + strand, within PP_0708 at 824.273 kb on - strand, within PP_0708 at 824.337 kb on - strand, within PP_0708 at 824.585 kb on + strand at 824.585 kb on + strand at 824.586 kb on - strand at 824.586 kb on - strand at 824.587 kb on + strand at 824.587 kb on + strand at 824.588 kb on - strand at 824.588 kb on - strand at 824.646 kb on + strand at 824.646 kb on + strand at 824.693 kb on + strand at 824.735 kb on + strand at 824.735 kb on + strand at 824.736 kb on - strand at 824.906 kb on + strand, within PP_0709 at 824.907 kb on - strand, within PP_0709 at 824.907 kb on - strand, within PP_0709 at 824.936 kb on - strand, within PP_0709 at 824.936 kb on - strand, within PP_0709 at 824.958 kb on - strand, within PP_0709 at 824.958 kb on - strand, within PP_0709 at 824.958 kb on - strand, within PP_0709 at 825.018 kb on + strand, within PP_0709 at 825.018 kb on + strand, within PP_0709 at 825.019 kb on - strand, within PP_0709 at 825.019 kb on - strand, within PP_0709 at 825.019 kb on - strand, within PP_0709 at 825.044 kb on - strand, within PP_0709 at 825.044 kb on - strand, within PP_0709 at 825.118 kb on - strand, within PP_0709 at 825.176 kb on + strand, within PP_0709 at 825.176 kb on + strand, within PP_0709 at 825.176 kb on + strand, within PP_0709 at 825.176 kb on + strand, within PP_0709 at 825.177 kb on - strand, within PP_0709 at 825.246 kb on + strand, within PP_0709 at 825.247 kb on - strand, within PP_0709 at 825.275 kb on + strand, within PP_0709 at 825.275 kb on + strand, within PP_0709 at 825.275 kb on + strand, within PP_0709 at 825.275 kb on + strand, within PP_0709 at 825.275 kb on + strand, within PP_0709 at 825.275 kb on + strand, within PP_0709 at 825.276 kb on - strand, within PP_0709 at 825.276 kb on - strand, within PP_0709 at 825.276 kb on - strand, within PP_0709 at 825.276 kb on - strand, within PP_0709 at 825.276 kb on - strand, within PP_0709 at 825.276 kb on - strand, within PP_0709 at 825.276 kb on - strand, within PP_0709 at 825.276 kb on - strand, within PP_0709 at 825.293 kb on + strand, within PP_0709 at 825.294 kb on - strand, within PP_0709 at 825.294 kb on - strand, within PP_0709 at 825.327 kb on + strand, within PP_0709 at 825.327 kb on + strand, within PP_0709 at 825.328 kb on - strand, within PP_0709 at 825.419 kb on + strand, within PP_0709 at 825.420 kb on - strand, within PP_0709 at 825.649 kb on + strand, within PP_0709 at 825.649 kb on + strand, within PP_0709 at 825.650 kb on - strand, within PP_0709 at 825.650 kb on - strand, within PP_0709 at 825.681 kb on - strand, within PP_0709 at 825.830 kb on - strand, within PP_0709 at 825.830 kb on - strand, within PP_0709 at 826.141 kb on + strand at 826.142 kb on - strand at 826.199 kb on + strand at 826.374 kb on + strand, within PP_0710 at 826.374 kb on + strand, within PP_0710 at 826.374 kb on + strand, within PP_0710 at 826.374 kb on + strand, within PP_0710 at 826.374 kb on + strand, within PP_0710 at 826.374 kb on + strand, within PP_0710 at 826.374 kb on + strand, within PP_0710 at 826.375 kb on - strand, within PP_0710 at 826.375 kb on - strand, within PP_0710 at 826.375 kb on - strand, within PP_0710 at 826.375 kb on - strand, within PP_0710 at 826.375 kb on - strand, within PP_0710 at 826.410 kb on - strand, within PP_0710 at 826.447 kb on + strand, within PP_0710 at 826.777 kb on + strand at 826.778 kb on - strand at 826.853 kb on + strand at 826.955 kb on - strand, within PP_0711
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 824,047 + PP_0708 0.61 -2.6 824,273 - PP_0708 0.77 +3.3 824,337 - PP_0708 0.81 -2.6 824,585 + +0.7 824,585 + -1.4 824,586 - -0.0 824,586 - -1.3 824,587 + -0.9 824,587 + -2.6 824,588 - -0.3 824,588 - -1.9 824,646 + -0.7 824,646 + +0.3 824,693 + -2.5 824,735 + +0.1 824,735 + -1.3 824,736 - -3.2 824,906 + PP_0709 0.19 -0.1 824,907 - PP_0709 0.19 -1.3 824,907 - PP_0709 0.19 -0.3 824,936 - PP_0709 0.21 -1.3 824,936 - PP_0709 0.21 +1.0 824,958 - PP_0709 0.23 +1.9 824,958 - PP_0709 0.23 +0.3 824,958 - PP_0709 0.23 -0.1 825,018 + PP_0709 0.27 -0.7 825,018 + PP_0709 0.27 -2.8 825,019 - PP_0709 0.27 -2.0 825,019 - PP_0709 0.27 -1.0 825,019 - PP_0709 0.27 -0.7 825,044 - PP_0709 0.28 -1.3 825,044 - PP_0709 0.28 -0.2 825,118 - PP_0709 0.33 +0.3 825,176 + PP_0709 0.37 -1.5 825,176 + PP_0709 0.37 -1.0 825,176 + PP_0709 0.37 -2.9 825,176 + PP_0709 0.37 +0.2 825,177 - PP_0709 0.37 +0.0 825,246 + PP_0709 0.42 -2.5 825,247 - PP_0709 0.42 -0.0 825,275 + PP_0709 0.44 -0.9 825,275 + PP_0709 0.44 -1.3 825,275 + PP_0709 0.44 +0.9 825,275 + PP_0709 0.44 -2.3 825,275 + PP_0709 0.44 -0.4 825,275 + PP_0709 0.44 +1.0 825,276 - PP_0709 0.44 -0.6 825,276 - PP_0709 0.44 -0.6 825,276 - PP_0709 0.44 -0.3 825,276 - PP_0709 0.44 -1.9 825,276 - PP_0709 0.44 +0.8 825,276 - PP_0709 0.44 +1.2 825,276 - PP_0709 0.44 -1.3 825,276 - PP_0709 0.44 -1.2 825,293 + PP_0709 0.45 +1.0 825,294 - PP_0709 0.45 -0.2 825,294 - PP_0709 0.45 -1.8 825,327 + PP_0709 0.47 -3.3 825,327 + PP_0709 0.47 +0.8 825,328 - PP_0709 0.47 -2.0 825,419 + PP_0709 0.53 -3.0 825,420 - PP_0709 0.54 +0.3 825,649 + PP_0709 0.69 +1.6 825,649 + PP_0709 0.69 +3.3 825,650 - PP_0709 0.69 -2.9 825,650 - PP_0709 0.69 -0.8 825,681 - PP_0709 0.71 +0.4 825,830 - PP_0709 0.81 -1.6 825,830 - PP_0709 0.81 -0.3 826,141 + -1.3 826,142 - -1.5 826,199 + -0.2 826,374 + PP_0710 0.42 +0.8 826,374 + PP_0710 0.42 -1.1 826,374 + PP_0710 0.42 +0.4 826,374 + PP_0710 0.42 -1.9 826,374 + PP_0710 0.42 -0.5 826,374 + PP_0710 0.42 -0.7 826,374 + PP_0710 0.42 -2.4 826,375 - PP_0710 0.43 +1.1 826,375 - PP_0710 0.43 +0.3 826,375 - PP_0710 0.43 -2.3 826,375 - PP_0710 0.43 -1.6 826,375 - PP_0710 0.43 -1.5 826,410 - PP_0710 0.52 -1.3 826,447 + PP_0710 0.61 +0.2 826,777 + +0.8 826,778 - -1.0 826,853 + +2.0 826,955 - PP_0711 0.23 -0.8
Or see this region's nucleotide sequence