Strain Fitness in Pseudomonas putida KT2440 around PP_0702

Experiment: P. putida PUT 7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0701 and PP_0702 are separated by 324 nucleotidesPP_0702 and PP_0703 are separated by 7 nucleotidesPP_0703 and PP_0704 overlap by 8 nucleotides PP_0701: PP_0701 - fosmidomycin efflux system, at 814,513 to 815,727 _0701 PP_0702: PP_0702 - Major facilitator family transporter, at 816,052 to 817,209 _0702 PP_0703: PP_0703 - putative Transmembrane sensor, at 817,217 to 818,167 _0703 PP_0704: PP_0704 - RNA polymerase sigma-70 factor, ECF subfamily, at 818,160 to 818,675 _0704 Position (kb) 816 817 818Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 815.111 kb on - strand, within PP_0701at 815.227 kb on + strand, within PP_0701at 815.227 kb on + strandat 815.227 kb on + strand, within PP_0701at 815.227 kb on + strand, within PP_0701at 815.227 kb on + strandat 815.228 kb on - strand, within PP_0701at 815.228 kb on - strand, within PP_0701at 815.228 kb on - strand, within PP_0701at 815.228 kb on - strand, within PP_0701at 815.233 kb on + strand, within PP_0701at 815.233 kb on + strand, within PP_0701at 815.233 kb on + strand, within PP_0701at 815.234 kb on - strand, within PP_0701at 815.234 kb on - strand, within PP_0701at 815.255 kb on - strand, within PP_0701at 815.259 kb on + strand, within PP_0701at 815.259 kb on + strand, within PP_0701at 815.260 kb on - strand, within PP_0701at 815.266 kb on + strand, within PP_0701at 815.267 kb on - strand, within PP_0701at 815.491 kb on - strand, within PP_0701at 815.524 kb on + strand, within PP_0701at 815.524 kb on + strand, within PP_0701at 815.525 kb on - strand, within PP_0701at 815.525 kb on - strand, within PP_0701at 815.624 kb on - strandat 815.644 kb on - strandat 815.650 kb on + strandat 815.650 kb on + strandat 815.650 kb on + strandat 815.651 kb on - strandat 815.651 kb on - strandat 815.651 kb on - strandat 815.651 kb on - strandat 815.656 kb on + strandat 815.657 kb on - strandat 815.657 kb on - strandat 815.657 kb on - strandat 815.712 kb on + strandat 815.712 kb on + strandat 815.712 kb on + strandat 815.712 kb on + strandat 815.719 kb on - strandat 815.817 kb on + strandat 815.817 kb on + strandat 815.818 kb on - strandat 815.821 kb on - strandat 815.821 kb on - strandat 816.049 kb on + strandat 816.049 kb on + strandat 816.049 kb on + strandat 816.049 kb on + strandat 816.050 kb on - strandat 816.050 kb on - strandat 816.050 kb on - strandat 816.050 kb on - strandat 816.050 kb on - strandat 816.078 kb on - strandat 816.265 kb on + strand, within PP_0702at 816.265 kb on + strand, within PP_0702at 816.265 kb on + strand, within PP_0702at 816.265 kb on + strand, within PP_0702at 816.265 kb on + strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.266 kb on - strand, within PP_0702at 816.451 kb on + strand, within PP_0702at 816.452 kb on - strand, within PP_0702at 816.452 kb on - strand, within PP_0702at 816.452 kb on - strand, within PP_0702at 816.724 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.967 kb on + strand, within PP_0702at 816.968 kb on - strand, within PP_0702at 816.968 kb on - strand, within PP_0702at 816.968 kb on - strand, within PP_0702at 816.968 kb on - strand, within PP_0702at 816.968 kb on - strand, within PP_0702at 816.968 kb on - strand, within PP_0702at 816.968 kb on - strandat 816.968 kb on - strand, within PP_0702at 816.968 kb on - strand, within PP_0702at 816.969 kb on + strand, within PP_0702at 816.969 kb on + strand, within PP_0702at 816.969 kb on + strand, within PP_0702at 816.969 kb on + strand, within PP_0702at 816.969 kb on + strand, within PP_0702at 816.970 kb on - strand, within PP_0702at 816.970 kb on - strand, within PP_0702at 816.970 kb on - strand, within PP_0702at 816.970 kb on - strand, within PP_0702at 817.210 kb on + strandat 817.218 kb on + strandat 817.219 kb on - strandat 817.219 kb on - strandat 817.242 kb on + strandat 817.242 kb on + strandat 817.243 kb on - strandat 817.243 kb on - strandat 817.255 kb on - strandat 817.320 kb on + strand, within PP_0703at 817.434 kb on - strand, within PP_0703at 817.740 kb on + strand, within PP_0703at 817.740 kb on + strand, within PP_0703at 817.740 kb on + strand, within PP_0703at 818.011 kb on + strand, within PP_0703at 818.156 kb on - strandat 818.173 kb on + strandat 818.174 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1
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815,111 - PP_0701 0.49 +0.2
815,227 + PP_0701 0.59 +0.7
815,227 + +2.3
815,227 + PP_0701 0.59 -2.2
815,227 + PP_0701 0.59 +0.3
815,227 + -0.3
815,228 - PP_0701 0.59 +0.2
815,228 - PP_0701 0.59 +0.5
815,228 - PP_0701 0.59 -0.5
815,228 - PP_0701 0.59 +0.6
815,233 + PP_0701 0.59 -2.0
815,233 + PP_0701 0.59 -0.4
815,233 + PP_0701 0.59 -1.4
815,234 - PP_0701 0.59 -0.0
815,234 - PP_0701 0.59 -3.4
815,255 - PP_0701 0.61 +0.5
815,259 + PP_0701 0.61 -1.4
815,259 + PP_0701 0.61 +0.5
815,260 - PP_0701 0.61 -0.0
815,266 + PP_0701 0.62 -0.1
815,267 - PP_0701 0.62 -0.7
815,491 - PP_0701 0.80 +0.1
815,524 + PP_0701 0.83 -0.4
815,524 + PP_0701 0.83 +1.2
815,525 - PP_0701 0.83 -0.0
815,525 - PP_0701 0.83 +0.2
815,624 - -0.7
815,644 - -3.9
815,650 + +0.1
815,650 + -1.3
815,650 + -1.9
815,651 - -3.9
815,651 - -2.7
815,651 - +0.3
815,651 - +0.2
815,656 + +0.8
815,657 - +1.5
815,657 - -0.5
815,657 - -0.7
815,712 + +0.8
815,712 + -2.4
815,712 + -0.9
815,712 + +0.3
815,719 - +0.9
815,817 + -1.6
815,817 + +0.9
815,818 - -0.9
815,821 - -0.7
815,821 - -0.2
816,049 + -2.8
816,049 + -0.5
816,049 + +1.7
816,049 + +1.0
816,050 - -2.0
816,050 - +0.2
816,050 - -2.6
816,050 - +1.1
816,050 - -0.3
816,078 - +0.1
816,265 + PP_0702 0.18 +0.8
816,265 + PP_0702 0.18 -0.9
816,265 + PP_0702 0.18 -2.9
816,265 + PP_0702 0.18 +1.3
816,265 + PP_0702 0.18 -0.7
816,266 - PP_0702 0.18 -1.0
816,266 - PP_0702 0.18 +1.2
816,266 - PP_0702 0.18 -0.2
816,266 - PP_0702 0.18 -2.0
816,266 - PP_0702 0.18 -0.7
816,266 - PP_0702 0.18 -3.1
816,266 - PP_0702 0.18 -0.5
816,451 + PP_0702 0.34 -0.7
816,452 - PP_0702 0.35 +2.5
816,452 - PP_0702 0.35 -0.6
816,452 - PP_0702 0.35 -3.2
816,724 + PP_0702 0.58 -1.8
816,967 + PP_0702 0.79 -2.3
816,967 + PP_0702 0.79 -0.3
816,967 + PP_0702 0.79 -0.1
816,967 + PP_0702 0.79 -0.7
816,967 + PP_0702 0.79 +1.3
816,967 + PP_0702 0.79 -1.5
816,967 + PP_0702 0.79 -0.4
816,967 + PP_0702 0.79 -0.6
816,967 + PP_0702 0.79 -2.1
816,967 + PP_0702 0.79 +3.2
816,968 - PP_0702 0.79 -1.8
816,968 - PP_0702 0.79 +0.7
816,968 - PP_0702 0.79 +1.3
816,968 - PP_0702 0.79 -0.3
816,968 - PP_0702 0.79 +0.3
816,968 - PP_0702 0.79 +1.0
816,968 - +0.3
816,968 - PP_0702 0.79 +2.1
816,968 - PP_0702 0.79 +1.3
816,969 + PP_0702 0.79 +0.7
816,969 + PP_0702 0.79 -2.5
816,969 + PP_0702 0.79 -2.5
816,969 + PP_0702 0.79 +0.0
816,969 + PP_0702 0.79 -1.4
816,970 - PP_0702 0.79 -0.8
816,970 - PP_0702 0.79 -3.3
816,970 - PP_0702 0.79 -0.5
816,970 - PP_0702 0.79 -0.7
817,210 + -1.5
817,218 + +0.0
817,219 - -0.6
817,219 - +1.1
817,242 + -0.1
817,242 + +0.2
817,243 - +0.3
817,243 - -0.1
817,255 - -0.3
817,320 + PP_0703 0.11 -0.5
817,434 - PP_0703 0.23 -1.7
817,740 + PP_0703 0.55 +0.3
817,740 + PP_0703 0.55 -2.4
817,740 + PP_0703 0.55 -1.0
818,011 + PP_0703 0.83 -0.2
818,156 - -0.7
818,173 + -0.3
818,174 - +0.6

Or see this region's nucleotide sequence