Strain Fitness in Pseudomonas putida KT2440 around PP_0666

Experiment: P. putida PUT 7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0665 and PP_0666 are separated by 16 nucleotidesPP_0666 and PP_0667 are separated by 170 nucleotidesPP_0667 and PP_0668 overlap by 4 nucleotides PP_0665: PP_0665 - putative glyceraldehyde-3-phosphate dehydrogenase, at 773,394 to 774,812 _0665 PP_0666: PP_0666 - conserved protein of unknown function, at 774,829 to 775,191 _0666 PP_0667: PP_0667 - RNA polymerase sigma-70 factor, ECF subfamily, at 775,362 to 775,898 _0667 PP_0668: PP_0668 - putative Transmembrane sensor, at 775,895 to 776,860 _0668 Position (kb) 774 775 776Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 773.832 kb on - strand, within PP_0665at 773.956 kb on - strand, within PP_0665at 773.996 kb on - strand, within PP_0665at 774.253 kb on + strand, within PP_0665at 774.254 kb on - strand, within PP_0665at 774.268 kb on - strand, within PP_0665at 774.268 kb on - strand, within PP_0665at 774.456 kb on + strand, within PP_0665at 774.589 kb on - strand, within PP_0665at 774.589 kb on - strand, within PP_0665at 774.650 kb on + strand, within PP_0665at 774.667 kb on + strand, within PP_0665at 774.667 kb on + strand, within PP_0665at 774.667 kb on + strand, within PP_0665at 774.667 kb on + strand, within PP_0665at 774.668 kb on - strand, within PP_0665at 774.668 kb on - strand, within PP_0665at 774.726 kb on + strandat 774.726 kb on + strandat 774.726 kb on + strandat 774.727 kb on - strandat 774.727 kb on - strandat 774.727 kb on - strandat 774.763 kb on - strandat 774.822 kb on + strandat 774.823 kb on - strandat 774.823 kb on - strandat 774.823 kb on - strandat 775.066 kb on + strand, within PP_0666at 775.066 kb on + strand, within PP_0666at 775.066 kb on + strand, within PP_0666at 775.067 kb on - strand, within PP_0666at 775.067 kb on - strand, within PP_0666at 775.136 kb on - strand, within PP_0666at 775.225 kb on + strandat 775.413 kb on + strandat 775.414 kb on - strandat 775.498 kb on + strand, within PP_0667at 775.557 kb on + strand, within PP_0667at 775.558 kb on - strand, within PP_0667at 775.568 kb on + strand, within PP_0667at 775.568 kb on + strand, within PP_0667at 775.568 kb on + strand, within PP_0667at 775.568 kb on + strand, within PP_0667at 775.568 kb on + strand, within PP_0667at 775.568 kb on + strand, within PP_0667at 775.569 kb on - strand, within PP_0667at 775.727 kb on + strand, within PP_0667at 775.727 kb on + strand, within PP_0667at 775.728 kb on - strand, within PP_0667at 775.833 kb on + strand, within PP_0667at 775.834 kb on - strand, within PP_0667at 775.847 kb on + strandat 775.847 kb on + strandat 775.847 kb on + strandat 775.848 kb on - strandat 775.848 kb on - strandat 775.848 kb on - strandat 775.848 kb on - strandat 775.848 kb on - strandat 775.848 kb on - strandat 775.851 kb on + strandat 775.851 kb on + strandat 775.851 kb on + strandat 775.851 kb on + strandat 775.852 kb on - strandat 775.852 kb on - strandat 775.852 kb on - strandat 776.043 kb on - strand, within PP_0668at 776.047 kb on - strand, within PP_0668at 776.047 kb on - strand, within PP_0668at 776.047 kb on - strand, within PP_0668

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1
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773,832 - PP_0665 0.31 -2.6
773,956 - PP_0665 0.40 -0.2
773,996 - PP_0665 0.42 -0.6
774,253 + PP_0665 0.61 +1.3
774,254 - PP_0665 0.61 +0.4
774,268 - PP_0665 0.62 -0.3
774,268 - PP_0665 0.62 +1.1
774,456 + PP_0665 0.75 -0.4
774,589 - PP_0665 0.84 -0.3
774,589 - PP_0665 0.84 +0.3
774,650 + PP_0665 0.89 -3.8
774,667 + PP_0665 0.90 -0.4
774,667 + PP_0665 0.90 +0.4
774,667 + PP_0665 0.90 -1.8
774,667 + PP_0665 0.90 +0.4
774,668 - PP_0665 0.90 -0.4
774,668 - PP_0665 0.90 +0.2
774,726 + -1.9
774,726 + +0.8
774,726 + +0.5
774,727 - -0.4
774,727 - -0.2
774,727 - -2.8
774,763 - +0.6
774,822 + -1.9
774,823 - -1.6
774,823 - +0.0
774,823 - -0.9
775,066 + PP_0666 0.65 +0.2
775,066 + PP_0666 0.65 -2.6
775,066 + PP_0666 0.65 -0.2
775,067 - PP_0666 0.66 -1.1
775,067 - PP_0666 0.66 -2.4
775,136 - PP_0666 0.85 -1.5
775,225 + -1.2
775,413 + -0.7
775,414 - -0.8
775,498 + PP_0667 0.25 +0.1
775,557 + PP_0667 0.36 +0.1
775,558 - PP_0667 0.36 -2.3
775,568 + PP_0667 0.38 +0.9
775,568 + PP_0667 0.38 -2.2
775,568 + PP_0667 0.38 +1.6
775,568 + PP_0667 0.38 +0.2
775,568 + PP_0667 0.38 +0.8
775,568 + PP_0667 0.38 +0.1
775,569 - PP_0667 0.39 -1.5
775,727 + PP_0667 0.68 +0.7
775,727 + PP_0667 0.68 -1.5
775,728 - PP_0667 0.68 -0.2
775,833 + PP_0667 0.88 +1.4
775,834 - PP_0667 0.88 +0.1
775,847 + -3.1
775,847 + -2.7
775,847 + -0.1
775,848 - -2.5
775,848 - +0.3
775,848 - -3.4
775,848 - -2.9
775,848 - +1.2
775,848 - -0.1
775,851 + -2.9
775,851 + -1.5
775,851 + +0.2
775,851 + -1.5
775,852 - -0.3
775,852 - +0.5
775,852 - +0.6
776,043 - PP_0668 0.15 -0.2
776,047 - PP_0668 0.16 +0.1
776,047 - PP_0668 0.16 -0.1
776,047 - PP_0668 0.16 -0.1

Or see this region's nucleotide sequence