Strain Fitness in Pseudomonas putida KT2440 around PP_0660

Experiment: P. putida PUT 7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0659 and PP_0660 are separated by 142 nucleotidesPP_0660 and PP_0661 are separated by 45 nucleotidesPP_0661 and PP_0662 are separated by 24 nucleotides PP_0659: PP_0659 - Cystathionine gamma-synthase, at 766,509 to 767,780 _0659 PP_0660: PP_0660 - S-methyl-L-methionine transporter, at 767,923 to 769,362 _0660 PP_0661: PP_0661 - putative Transcriptional regulator AmpR, at 769,408 to 770,292 _0661 PP_0662: PP_0662 - putative Threonine synthase, at 770,317 to 771,705 _0662 Position (kb) 767 768 769 770Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 766.932 kb on - strand, within PP_0659at 766.986 kb on + strand, within PP_0659at 766.986 kb on + strand, within PP_0659at 766.987 kb on - strand, within PP_0659at 767.291 kb on + strand, within PP_0659at 767.291 kb on + strand, within PP_0659at 767.353 kb on - strand, within PP_0659at 767.353 kb on - strand, within PP_0659at 767.353 kb on - strand, within PP_0659at 767.388 kb on + strand, within PP_0659at 767.517 kb on + strand, within PP_0659at 767.517 kb on + strand, within PP_0659at 767.517 kb on + strand, within PP_0659at 767.517 kb on + strand, within PP_0659at 767.518 kb on - strand, within PP_0659at 767.518 kb on - strand, within PP_0659at 767.518 kb on - strand, within PP_0659at 767.559 kb on + strand, within PP_0659at 767.559 kb on + strand, within PP_0659at 767.559 kb on + strand, within PP_0659at 767.559 kb on + strand, within PP_0659at 767.559 kb on + strand, within PP_0659at 767.559 kb on + strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.560 kb on - strand, within PP_0659at 767.791 kb on + strandat 767.792 kb on - strandat 767.792 kb on - strandat 767.842 kb on + strandat 767.843 kb on - strandat 767.886 kb on + strandat 767.887 kb on - strandat 767.946 kb on + strandat 767.946 kb on + strandat 767.946 kb on + strandat 767.947 kb on - strandat 767.947 kb on - strandat 767.947 kb on - strandat 767.947 kb on - strandat 767.980 kb on - strandat 768.023 kb on + strandat 768.023 kb on + strandat 768.023 kb on + strandat 768.024 kb on - strandat 768.024 kb on - strandat 768.094 kb on + strand, within PP_0660at 768.094 kb on + strand, within PP_0660at 768.094 kb on + strand, within PP_0660at 768.094 kb on + strand, within PP_0660at 768.095 kb on - strand, within PP_0660at 768.095 kb on - strand, within PP_0660at 768.095 kb on - strand, within PP_0660at 768.095 kb on - strand, within PP_0660at 768.099 kb on - strand, within PP_0660at 768.099 kb on - strand, within PP_0660at 768.118 kb on + strand, within PP_0660at 768.118 kb on + strand, within PP_0660at 768.119 kb on - strand, within PP_0660at 768.119 kb on - strand, within PP_0660at 768.119 kb on - strand, within PP_0660at 768.152 kb on + strand, within PP_0660at 768.184 kb on + strand, within PP_0660at 768.185 kb on - strand, within PP_0660at 768.217 kb on + strand, within PP_0660at 768.218 kb on - strand, within PP_0660at 768.218 kb on - strand, within PP_0660at 768.235 kb on + strand, within PP_0660at 768.236 kb on - strand, within PP_0660at 768.367 kb on - strand, within PP_0660at 768.710 kb on + strand, within PP_0660at 768.794 kb on - strand, within PP_0660at 768.860 kb on - strand, within PP_0660at 769.021 kb on + strand, within PP_0660at 769.021 kb on + strand, within PP_0660at 769.021 kb on + strand, within PP_0660at 769.021 kb on + strand, within PP_0660at 769.022 kb on - strand, within PP_0660at 769.058 kb on + strand, within PP_0660at 769.059 kb on - strand, within PP_0660at 769.108 kb on + strand, within PP_0660at 769.108 kb on + strand, within PP_0660at 769.108 kb on + strand, within PP_0660at 769.108 kb on + strand, within PP_0660at 769.108 kb on + strand, within PP_0660at 769.108 kb on + strand, within PP_0660at 769.108 kb on + strandat 769.109 kb on - strand, within PP_0660at 769.109 kb on - strand, within PP_0660at 769.109 kb on - strand, within PP_0660at 769.109 kb on - strand, within PP_0660at 769.196 kb on + strand, within PP_0660at 769.197 kb on - strand, within PP_0660at 769.246 kb on + strandat 769.285 kb on + strandat 769.285 kb on + strandat 769.286 kb on - strandat 769.286 kb on - strandat 769.286 kb on - strandat 769.303 kb on + strandat 769.303 kb on + strandat 769.372 kb on - strandat 769.372 kb on - strandat 769.372 kb on - strandat 769.374 kb on + strandat 769.374 kb on + strandat 769.374 kb on + strandat 769.374 kb on + strandat 769.374 kb on + strandat 769.506 kb on + strand, within PP_0661at 769.506 kb on + strand, within PP_0661at 769.615 kb on + strand, within PP_0661at 769.615 kb on + strand, within PP_0661at 769.615 kb on + strand, within PP_0661at 769.616 kb on - strand, within PP_0661at 769.638 kb on + strand, within PP_0661at 769.703 kb on + strand, within PP_0661at 769.789 kb on + strand, within PP_0661at 769.790 kb on - strand, within PP_0661at 769.790 kb on - strand, within PP_0661at 770.012 kb on - strand, within PP_0661at 770.012 kb on - strand, within PP_0661at 770.138 kb on + strand, within PP_0661at 770.290 kb on + strandat 770.291 kb on - strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.296 kb on - strandat 770.296 kb on - strandat 770.296 kb on - strandat 770.299 kb on + strandat 770.299 kb on + strandat 770.299 kb on + strandat 770.299 kb on + strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.303 kb on + strandat 770.304 kb on - strandat 770.304 kb on - strandat 770.304 kb on - strandat 770.323 kb on + strandat 770.324 kb on - strandat 770.324 kb on - strandat 770.324 kb on - strandat 770.324 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1
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766,932 - PP_0659 0.33 -2.6
766,986 + PP_0659 0.38 +1.5
766,986 + PP_0659 0.38 -0.6
766,987 - PP_0659 0.38 +0.3
767,291 + PP_0659 0.61 +0.3
767,291 + PP_0659 0.61 -2.0
767,353 - PP_0659 0.66 -1.4
767,353 - PP_0659 0.66 +0.4
767,353 - PP_0659 0.66 -1.7
767,388 + PP_0659 0.69 -1.7
767,517 + PP_0659 0.79 +1.0
767,517 + PP_0659 0.79 -3.3
767,517 + PP_0659 0.79 -1.4
767,517 + PP_0659 0.79 -0.6
767,518 - PP_0659 0.79 -2.3
767,518 - PP_0659 0.79 +0.4
767,518 - PP_0659 0.79 -3.1
767,559 + PP_0659 0.83 -1.3
767,559 + PP_0659 0.83 -0.8
767,559 + PP_0659 0.83 -0.4
767,559 + PP_0659 0.83 -3.1
767,559 + PP_0659 0.83 -2.5
767,559 + PP_0659 0.83 +0.7
767,560 - PP_0659 0.83 +0.5
767,560 - PP_0659 0.83 -1.5
767,560 - PP_0659 0.83 +0.9
767,560 - PP_0659 0.83 -1.9
767,560 - PP_0659 0.83 -0.1
767,560 - PP_0659 0.83 -2.1
767,560 - PP_0659 0.83 -0.5
767,560 - PP_0659 0.83 -2.8
767,560 - PP_0659 0.83 -3.3
767,560 - PP_0659 0.83 -1.9
767,791 + -2.8
767,792 - +0.3
767,792 - -0.6
767,842 + -2.3
767,843 - -0.3
767,886 + -0.8
767,887 - -2.4
767,946 + -2.9
767,946 + +0.9
767,946 + +0.2
767,947 - +0.5
767,947 - -0.4
767,947 - -2.6
767,947 - -3.1
767,980 - +2.1
768,023 + -1.3
768,023 + -2.3
768,023 + +0.2
768,024 - -3.0
768,024 - +0.7
768,094 + PP_0660 0.12 -2.7
768,094 + PP_0660 0.12 -3.5
768,094 + PP_0660 0.12 +1.7
768,094 + PP_0660 0.12 -0.0
768,095 - PP_0660 0.12 -0.3
768,095 - PP_0660 0.12 -1.0
768,095 - PP_0660 0.12 +1.1
768,095 - PP_0660 0.12 -1.2
768,099 - PP_0660 0.12 -1.3
768,099 - PP_0660 0.12 -1.5
768,118 + PP_0660 0.14 -1.0
768,118 + PP_0660 0.14 +0.0
768,119 - PP_0660 0.14 -0.6
768,119 - PP_0660 0.14 -0.7
768,119 - PP_0660 0.14 +0.7
768,152 + PP_0660 0.16 -2.4
768,184 + PP_0660 0.18 -1.1
768,185 - PP_0660 0.18 -0.2
768,217 + PP_0660 0.20 +0.1
768,218 - PP_0660 0.20 -3.3
768,218 - PP_0660 0.20 -1.5
768,235 + PP_0660 0.22 -0.4
768,236 - PP_0660 0.22 -2.6
768,367 - PP_0660 0.31 -0.7
768,710 + PP_0660 0.55 -1.7
768,794 - PP_0660 0.60 -2.7
768,860 - PP_0660 0.65 +0.3
769,021 + PP_0660 0.76 +1.4
769,021 + PP_0660 0.76 -0.8
769,021 + PP_0660 0.76 -1.5
769,021 + PP_0660 0.76 -2.3
769,022 - PP_0660 0.76 +1.0
769,058 + PP_0660 0.79 -0.4
769,059 - PP_0660 0.79 -0.6
769,108 + PP_0660 0.82 -2.5
769,108 + PP_0660 0.82 +0.1
769,108 + PP_0660 0.82 -0.1
769,108 + PP_0660 0.82 -0.5
769,108 + PP_0660 0.82 -2.5
769,108 + PP_0660 0.82 +0.8
769,108 + -0.7
769,109 - PP_0660 0.82 -3.1
769,109 - PP_0660 0.82 -4.1
769,109 - PP_0660 0.82 +0.3
769,109 - PP_0660 0.82 +0.3
769,196 + PP_0660 0.88 -0.7
769,197 - PP_0660 0.88 +0.5
769,246 + -0.5
769,285 + +0.3
769,285 + +0.7
769,286 - -0.3
769,286 - -2.1
769,286 - +0.2
769,303 + -2.0
769,303 + +0.1
769,372 - -1.1
769,372 - +0.2
769,372 - +0.8
769,374 + -2.6
769,374 + -0.1
769,374 + +0.1
769,374 + -3.5
769,374 + +1.7
769,506 + PP_0661 0.11 -0.1
769,506 + PP_0661 0.11 -2.8
769,615 + PP_0661 0.23 -1.0
769,615 + PP_0661 0.23 +0.5
769,615 + PP_0661 0.23 -0.5
769,616 - PP_0661 0.24 +1.3
769,638 + PP_0661 0.26 -1.2
769,703 + PP_0661 0.33 -1.3
769,789 + PP_0661 0.43 +0.2
769,790 - PP_0661 0.43 -1.5
769,790 - PP_0661 0.43 +2.2
770,012 - PP_0661 0.68 -0.6
770,012 - PP_0661 0.68 -0.6
770,138 + PP_0661 0.82 -1.0
770,290 + -2.9
770,291 - -3.6
770,295 + -2.6
770,295 + -0.5
770,295 + +1.0
770,295 + +0.5
770,295 + +1.3
770,295 + -1.6
770,295 + -1.5
770,295 + -1.5
770,296 - -2.8
770,296 - -1.9
770,296 - -0.3
770,299 + +0.8
770,299 + +1.6
770,299 + +0.0
770,299 + -2.0
770,300 - -1.3
770,300 - +0.8
770,300 - -0.4
770,300 - -0.0
770,300 - -0.3
770,300 - -1.8
770,300 - +1.3
770,300 - +0.4
770,303 + -2.0
770,304 - -2.7
770,304 - -2.1
770,304 - -0.6
770,323 + +0.3
770,324 - -1.7
770,324 - -1.1
770,324 - -1.9
770,324 - -0.6

Or see this region's nucleotide sequence