Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0658 and PP_0659 are separated by 167 nucleotides PP_0659 and PP_0660 are separated by 142 nucleotides
PP_0658: PP_0658 - Homocysteine S-methyltransferase family protein, at 765,406 to 766,341
_0658
PP_0659: PP_0659 - Cystathionine gamma-synthase, at 766,509 to 767,780
_0659
PP_0660: PP_0660 - S-methyl-L-methionine transporter, at 767,923 to 769,362
_0660
Position (kb) 766
767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.629 kb on + strand, within PP_0658 at 765.629 kb on + strand, within PP_0658 at 765.720 kb on + strand, within PP_0658 at 765.721 kb on - strand, within PP_0658 at 766.056 kb on + strand, within PP_0658 at 766.056 kb on + strand, within PP_0658 at 766.057 kb on - strand, within PP_0658 at 766.057 kb on - strand, within PP_0658 at 766.390 kb on - strand at 766.447 kb on + strand at 766.448 kb on - strand at 766.448 kb on - strand at 766.448 kb on - strand at 766.449 kb on + strand at 766.449 kb on + strand at 766.449 kb on + strand at 766.450 kb on - strand at 766.450 kb on - strand at 766.450 kb on - strand at 766.450 kb on - strand at 766.480 kb on + strand at 766.481 kb on - strand at 766.481 kb on - strand at 766.585 kb on + strand at 766.585 kb on + strand at 766.585 kb on + strand at 766.586 kb on - strand at 766.586 kb on - strand at 766.586 kb on - strand at 766.586 kb on - strand at 766.596 kb on + strand at 766.596 kb on + strand at 766.596 kb on + strand at 766.597 kb on - strand at 766.597 kb on - strand at 766.597 kb on - strand at 766.635 kb on + strand at 766.636 kb on - strand at 766.636 kb on - strand at 766.642 kb on - strand, within PP_0659 at 766.642 kb on - strand, within PP_0659 at 766.662 kb on + strand, within PP_0659 at 766.663 kb on - strand, within PP_0659 at 766.663 kb on - strand, within PP_0659 at 766.698 kb on + strand, within PP_0659 at 766.699 kb on - strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.864 kb on - strand, within PP_0659 at 766.864 kb on - strand, within PP_0659 at 766.864 kb on - strand, within PP_0659 at 766.932 kb on - strand, within PP_0659 at 766.986 kb on + strand, within PP_0659 at 766.986 kb on + strand, within PP_0659 at 766.987 kb on - strand, within PP_0659 at 767.291 kb on + strand, within PP_0659 at 767.291 kb on + strand, within PP_0659 at 767.353 kb on - strand, within PP_0659 at 767.353 kb on - strand, within PP_0659 at 767.353 kb on - strand, within PP_0659 at 767.388 kb on + strand, within PP_0659 at 767.517 kb on + strand, within PP_0659 at 767.517 kb on + strand, within PP_0659 at 767.517 kb on + strand, within PP_0659 at 767.517 kb on + strand, within PP_0659 at 767.518 kb on - strand, within PP_0659 at 767.518 kb on - strand, within PP_0659 at 767.518 kb on - strand, within PP_0659 at 767.559 kb on + strand, within PP_0659 at 767.559 kb on + strand, within PP_0659 at 767.559 kb on + strand, within PP_0659 at 767.559 kb on + strand, within PP_0659 at 767.559 kb on + strand, within PP_0659 at 767.559 kb on + strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.560 kb on - strand, within PP_0659 at 767.791 kb on + strand at 767.792 kb on - strand at 767.792 kb on - strand at 767.842 kb on + strand at 767.843 kb on - strand at 767.886 kb on + strand at 767.887 kb on - strand at 767.946 kb on + strand at 767.946 kb on + strand at 767.946 kb on + strand at 767.947 kb on - strand at 767.947 kb on - strand at 767.947 kb on - strand at 767.947 kb on - strand at 767.980 kb on - strand at 768.023 kb on + strand at 768.023 kb on + strand at 768.023 kb on + strand at 768.024 kb on - strand at 768.024 kb on - strand at 768.094 kb on + strand, within PP_0660 at 768.094 kb on + strand, within PP_0660 at 768.094 kb on + strand, within PP_0660 at 768.094 kb on + strand, within PP_0660 at 768.095 kb on - strand, within PP_0660 at 768.095 kb on - strand, within PP_0660 at 768.095 kb on - strand, within PP_0660 at 768.095 kb on - strand, within PP_0660 at 768.099 kb on - strand, within PP_0660 at 768.099 kb on - strand, within PP_0660 at 768.118 kb on + strand, within PP_0660 at 768.118 kb on + strand, within PP_0660 at 768.119 kb on - strand, within PP_0660 at 768.119 kb on - strand, within PP_0660 at 768.119 kb on - strand, within PP_0660 at 768.152 kb on + strand, within PP_0660 at 768.184 kb on + strand, within PP_0660 at 768.185 kb on - strand, within PP_0660 at 768.217 kb on + strand, within PP_0660 at 768.218 kb on - strand, within PP_0660 at 768.218 kb on - strand, within PP_0660 at 768.235 kb on + strand, within PP_0660 at 768.236 kb on - strand, within PP_0660 at 768.367 kb on - strand, within PP_0660 at 768.710 kb on + strand, within PP_0660
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 765,622 + PP_0658 0.23 -0.6 765,622 + PP_0658 0.23 -0.9 765,622 + PP_0658 0.23 +0.3 765,622 + PP_0658 0.23 +0.4 765,622 + PP_0658 0.23 -1.7 765,622 + PP_0658 0.23 +1.3 765,623 - PP_0658 0.23 +1.2 765,623 - PP_0658 0.23 +0.3 765,623 - PP_0658 0.23 -1.5 765,623 - PP_0658 0.23 +0.1 765,623 - PP_0658 0.23 -0.0 765,623 - PP_0658 0.23 -2.9 765,623 - PP_0658 0.23 -0.6 765,623 - PP_0658 0.23 +0.8 765,623 - PP_0658 0.23 -1.0 765,623 - PP_0658 0.23 -0.6 765,623 - PP_0658 0.23 +1.3 765,623 - PP_0658 0.23 -1.9 765,623 - PP_0658 0.23 -0.7 765,629 + PP_0658 0.24 -1.3 765,629 + PP_0658 0.24 +0.4 765,720 + PP_0658 0.34 -0.0 765,721 - PP_0658 0.34 +1.3 766,056 + PP_0658 0.69 -0.6 766,056 + PP_0658 0.69 -2.7 766,057 - PP_0658 0.70 -3.5 766,057 - PP_0658 0.70 -0.2 766,390 - +0.8 766,447 + -0.3 766,448 - +0.8 766,448 - -1.5 766,448 - +0.2 766,449 + -3.6 766,449 + -0.0 766,449 + -1.0 766,450 - -2.1 766,450 - -0.8 766,450 - +0.9 766,450 - -1.1 766,480 + +0.9 766,481 - -0.2 766,481 - -2.0 766,585 + -1.1 766,585 + -3.1 766,585 + +0.9 766,586 - -3.3 766,586 - -0.5 766,586 - +0.3 766,586 - -1.0 766,596 + -2.2 766,596 + +0.1 766,596 + +0.3 766,597 - +0.1 766,597 - -0.1 766,597 - -0.3 766,635 + -1.3 766,636 - -1.8 766,636 - -0.1 766,642 - PP_0659 0.10 -0.1 766,642 - PP_0659 0.10 +0.9 766,662 + PP_0659 0.12 +1.0 766,663 - PP_0659 0.12 -1.3 766,663 - PP_0659 0.12 -2.4 766,698 + PP_0659 0.15 +1.7 766,699 - PP_0659 0.15 +0.2 766,863 + PP_0659 0.28 -1.0 766,863 + PP_0659 0.28 -1.3 766,863 + PP_0659 0.28 -2.8 766,863 + PP_0659 0.28 -1.3 766,863 + PP_0659 0.28 +0.3 766,864 - PP_0659 0.28 +0.8 766,864 - PP_0659 0.28 -0.4 766,864 - PP_0659 0.28 +0.1 766,932 - PP_0659 0.33 -2.6 766,986 + PP_0659 0.38 +1.5 766,986 + PP_0659 0.38 -0.6 766,987 - PP_0659 0.38 +0.3 767,291 + PP_0659 0.61 +0.3 767,291 + PP_0659 0.61 -2.0 767,353 - PP_0659 0.66 -1.4 767,353 - PP_0659 0.66 +0.4 767,353 - PP_0659 0.66 -1.7 767,388 + PP_0659 0.69 -1.7 767,517 + PP_0659 0.79 +1.0 767,517 + PP_0659 0.79 -3.3 767,517 + PP_0659 0.79 -1.4 767,517 + PP_0659 0.79 -0.6 767,518 - PP_0659 0.79 -2.3 767,518 - PP_0659 0.79 +0.4 767,518 - PP_0659 0.79 -3.1 767,559 + PP_0659 0.83 -1.3 767,559 + PP_0659 0.83 -0.8 767,559 + PP_0659 0.83 -0.4 767,559 + PP_0659 0.83 -3.1 767,559 + PP_0659 0.83 -2.5 767,559 + PP_0659 0.83 +0.7 767,560 - PP_0659 0.83 +0.5 767,560 - PP_0659 0.83 -1.5 767,560 - PP_0659 0.83 +0.9 767,560 - PP_0659 0.83 -1.9 767,560 - PP_0659 0.83 -0.1 767,560 - PP_0659 0.83 -2.1 767,560 - PP_0659 0.83 -0.5 767,560 - PP_0659 0.83 -2.8 767,560 - PP_0659 0.83 -3.3 767,560 - PP_0659 0.83 -1.9 767,791 + -2.8 767,792 - +0.3 767,792 - -0.6 767,842 + -2.3 767,843 - -0.3 767,886 + -0.8 767,887 - -2.4 767,946 + -2.9 767,946 + +0.9 767,946 + +0.2 767,947 - +0.5 767,947 - -0.4 767,947 - -2.6 767,947 - -3.1 767,980 - +2.1 768,023 + -1.3 768,023 + -2.3 768,023 + +0.2 768,024 - -3.0 768,024 - +0.7 768,094 + PP_0660 0.12 -2.7 768,094 + PP_0660 0.12 -3.5 768,094 + PP_0660 0.12 +1.7 768,094 + PP_0660 0.12 -0.0 768,095 - PP_0660 0.12 -0.3 768,095 - PP_0660 0.12 -1.0 768,095 - PP_0660 0.12 +1.1 768,095 - PP_0660 0.12 -1.2 768,099 - PP_0660 0.12 -1.3 768,099 - PP_0660 0.12 -1.5 768,118 + PP_0660 0.14 -1.0 768,118 + PP_0660 0.14 +0.0 768,119 - PP_0660 0.14 -0.6 768,119 - PP_0660 0.14 -0.7 768,119 - PP_0660 0.14 +0.7 768,152 + PP_0660 0.16 -2.4 768,184 + PP_0660 0.18 -1.1 768,185 - PP_0660 0.18 -0.2 768,217 + PP_0660 0.20 +0.1 768,218 - PP_0660 0.20 -3.3 768,218 - PP_0660 0.20 -1.5 768,235 + PP_0660 0.22 -0.4 768,236 - PP_0660 0.22 -2.6 768,367 - PP_0660 0.31 -0.7 768,710 + PP_0660 0.55 -1.7
Or see this region's nucleotide sequence