Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5454 and PP_0656 are separated by 61 nucleotides PP_0656 and PP_0657 overlap by 4 nucleotides PP_0657 and PP_0658 are separated by 61 nucleotides
PP_5454: PP_5454 - conserved membrane protein of unknown function, at 763,278 to 763,637
_5454
PP_0656: PP_0656 - putative Amino acid ABC transporter, permease protein, at 763,699 to 764,520
_0656
PP_0657: PP_0657 - putative Amino acid ABC transporter, periplasmic amino acid-binding protein, at 764,517 to 765,344
_0657
PP_0658: PP_0658 - Homocysteine S-methyltransferase family protein, at 765,406 to 766,341
_0658
Position (kb) 764
765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 763.630 kb on - strand at 763.630 kb on - strand at 763.709 kb on + strand at 763.709 kb on + strand at 763.709 kb on + strand at 763.709 kb on + strand at 763.710 kb on - strand at 763.775 kb on + strand at 763.775 kb on + strand at 763.775 kb on + strand at 763.776 kb on - strand at 763.776 kb on - strand at 763.776 kb on - strand at 763.808 kb on + strand, within PP_0656 at 763.814 kb on + strand, within PP_0656 at 763.814 kb on + strand, within PP_0656 at 764.058 kb on - strand, within PP_0656 at 764.066 kb on + strand, within PP_0656 at 764.067 kb on - strand, within PP_0656 at 764.138 kb on + strand, within PP_0656 at 764.139 kb on - strand, within PP_0656 at 764.139 kb on - strand, within PP_0656 at 764.189 kb on + strand, within PP_0656 at 764.189 kb on + strand at 764.190 kb on - strand, within PP_0656 at 764.190 kb on - strand, within PP_0656 at 764.266 kb on + strand, within PP_0656 at 764.527 kb on - strand at 764.601 kb on + strand, within PP_0657 at 764.601 kb on + strand, within PP_0657 at 764.660 kb on - strand, within PP_0657 at 764.729 kb on + strand, within PP_0657 at 764.730 kb on - strand, within PP_0657 at 764.797 kb on + strand, within PP_0657 at 764.798 kb on - strand, within PP_0657 at 764.878 kb on + strand, within PP_0657 at 764.879 kb on - strand, within PP_0657 at 764.887 kb on + strand, within PP_0657 at 764.989 kb on + strand, within PP_0657 at 764.993 kb on - strand, within PP_0657 at 764.993 kb on - strand, within PP_0657 at 765.303 kb on + strand at 765.303 kb on + strand at 765.304 kb on - strand at 765.304 kb on - strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.341 kb on - strand at 765.341 kb on - strand at 765.341 kb on - strand at 765.344 kb on + strand at 765.345 kb on - strand at 765.345 kb on - strand at 765.345 kb on - strand at 765.351 kb on + strand at 765.352 kb on - strand at 765.376 kb on + strand at 765.381 kb on - strand at 765.383 kb on + strand at 765.384 kb on - strand at 765.404 kb on + strand at 765.440 kb on - strand at 765.441 kb on + strand at 765.441 kb on + strand at 765.441 kb on + strand at 765.442 kb on - strand at 765.462 kb on - strand at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.629 kb on + strand, within PP_0658 at 765.629 kb on + strand, within PP_0658 at 765.720 kb on + strand, within PP_0658 at 765.721 kb on - strand, within PP_0658 at 766.056 kb on + strand, within PP_0658 at 766.056 kb on + strand, within PP_0658 at 766.057 kb on - strand, within PP_0658 at 766.057 kb on - strand, within PP_0658
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 763,630 - +0.3 763,630 - +0.9 763,709 + +0.6 763,709 + -1.7 763,709 + -0.4 763,709 + -1.7 763,710 - +0.3 763,775 + -0.3 763,775 + -0.9 763,775 + -3.2 763,776 - +0.7 763,776 - +0.2 763,776 - +1.6 763,808 + PP_0656 0.13 -0.3 763,814 + PP_0656 0.14 -1.4 763,814 + PP_0656 0.14 +1.3 764,058 - PP_0656 0.44 -0.7 764,066 + PP_0656 0.45 +0.2 764,067 - PP_0656 0.45 -0.5 764,138 + PP_0656 0.53 -1.8 764,139 - PP_0656 0.54 -0.5 764,139 - PP_0656 0.54 -2.2 764,189 + PP_0656 0.60 -0.6 764,189 + +3.3 764,190 - PP_0656 0.60 -1.3 764,190 - PP_0656 0.60 +0.5 764,266 + PP_0656 0.69 -3.2 764,527 - -0.2 764,601 + PP_0657 0.10 -1.4 764,601 + PP_0657 0.10 -2.6 764,660 - PP_0657 0.17 +1.1 764,729 + PP_0657 0.26 +0.3 764,730 - PP_0657 0.26 -1.0 764,797 + PP_0657 0.34 -3.4 764,798 - PP_0657 0.34 -2.6 764,878 + PP_0657 0.44 -0.4 764,879 - PP_0657 0.44 -1.3 764,887 + PP_0657 0.45 -0.5 764,989 + PP_0657 0.57 -1.7 764,993 - PP_0657 0.57 +0.0 764,993 - PP_0657 0.57 -1.4 765,303 + -1.3 765,303 + -2.4 765,304 - -0.2 765,304 - +0.1 765,340 + +0.4 765,340 + -3.7 765,340 + +1.9 765,340 + -3.0 765,340 + -0.5 765,340 + -3.4 765,341 - +0.8 765,341 - +0.5 765,341 - -0.1 765,344 + -0.7 765,345 - -0.6 765,345 - -3.2 765,345 - -1.0 765,351 + -1.8 765,352 - -1.3 765,376 + -2.2 765,381 - +0.4 765,383 + +0.3 765,384 - -2.6 765,404 + +1.0 765,440 - +0.2 765,441 + +0.4 765,441 + +1.0 765,441 + +2.0 765,442 - -0.1 765,462 - -2.9 765,622 + PP_0658 0.23 -0.6 765,622 + PP_0658 0.23 -0.9 765,622 + PP_0658 0.23 +0.3 765,622 + PP_0658 0.23 +0.4 765,622 + PP_0658 0.23 -1.7 765,622 + PP_0658 0.23 +1.3 765,623 - PP_0658 0.23 +1.2 765,623 - PP_0658 0.23 +0.3 765,623 - PP_0658 0.23 -1.5 765,623 - PP_0658 0.23 +0.1 765,623 - PP_0658 0.23 -0.0 765,623 - PP_0658 0.23 -2.9 765,623 - PP_0658 0.23 -0.6 765,623 - PP_0658 0.23 +0.8 765,623 - PP_0658 0.23 -1.0 765,623 - PP_0658 0.23 -0.6 765,623 - PP_0658 0.23 +1.3 765,623 - PP_0658 0.23 -1.9 765,623 - PP_0658 0.23 -0.7 765,629 + PP_0658 0.24 -1.3 765,629 + PP_0658 0.24 +0.4 765,720 + PP_0658 0.34 -0.0 765,721 - PP_0658 0.34 +1.3 766,056 + PP_0658 0.69 -0.6 766,056 + PP_0658 0.69 -2.7 766,057 - PP_0658 0.70 -3.5 766,057 - PP_0658 0.70 -0.2
Or see this region's nucleotide sequence