Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5449 and PP_0639 are separated by 199 nucleotides PP_0639 and PP_0640 overlap by 4 nucleotides
PP_5449: PP_5449 - conserved exported protein of unknown function, at 747,948 to 748,766
_5449
PP_0639: PP_0639 - conserved protein of unknown function, at 748,966 to 749,682
_0639
PP_0640: PP_0640 - conserved protein of unknown function, at 749,679 to 750,863
_0640
Position (kb) 748
749
750 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 747.977 kb on - strand at 748.034 kb on + strand, within PP_5449 at 748.034 kb on + strand, within PP_5449 at 748.035 kb on - strand, within PP_5449 at 748.035 kb on - strand, within PP_5449 at 748.039 kb on - strand, within PP_5449 at 748.039 kb on - strand, within PP_5449 at 748.110 kb on - strand, within PP_5449 at 748.127 kb on + strand, within PP_5449 at 748.253 kb on + strand, within PP_5449 at 748.312 kb on - strand, within PP_5449 at 748.328 kb on - strand, within PP_5449 at 748.494 kb on - strand, within PP_5449 at 748.566 kb on + strand, within PP_5449 at 748.738 kb on - strand at 748.773 kb on - strand at 748.812 kb on + strand at 748.812 kb on + strand at 748.879 kb on + strand at 748.880 kb on - strand at 749.101 kb on - strand, within PP_0639 at 749.141 kb on + strand, within PP_0639 at 749.239 kb on - strand, within PP_0639 at 749.279 kb on - strand, within PP_0639 at 749.308 kb on + strand, within PP_0639 at 749.309 kb on - strand, within PP_0639 at 749.309 kb on - strand, within PP_0639 at 749.315 kb on - strand, within PP_0639 at 749.355 kb on + strand, within PP_0639 at 749.421 kb on - strand, within PP_0639 at 749.652 kb on - strand at 749.652 kb on - strand at 749.704 kb on + strand at 750.454 kb on - strand, within PP_0640 at 750.492 kb on - strand, within PP_0640 at 750.593 kb on + strand, within PP_0640 at 750.616 kb on + strand, within PP_0640 at 750.617 kb on - strand, within PP_0640 at 750.658 kb on - strand, within PP_0640
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 747,977 - +1.0 748,034 + PP_5449 0.11 -0.7 748,034 + PP_5449 0.11 +1.7 748,035 - PP_5449 0.11 +0.5 748,035 - PP_5449 0.11 +1.7 748,039 - PP_5449 0.11 -2.9 748,039 - PP_5449 0.11 -0.6 748,110 - PP_5449 0.20 -1.1 748,127 + PP_5449 0.22 -2.3 748,253 + PP_5449 0.37 -0.2 748,312 - PP_5449 0.44 +0.4 748,328 - PP_5449 0.46 +0.1 748,494 - PP_5449 0.67 +0.6 748,566 + PP_5449 0.75 -0.6 748,738 - +1.5 748,773 - +0.3 748,812 + +0.5 748,812 + +1.1 748,879 + -0.2 748,880 - -0.8 749,101 - PP_0639 0.19 -0.1 749,141 + PP_0639 0.24 +2.4 749,239 - PP_0639 0.38 +1.8 749,279 - PP_0639 0.44 +0.4 749,308 + PP_0639 0.48 +1.0 749,309 - PP_0639 0.48 +2.4 749,309 - PP_0639 0.48 +0.4 749,315 - PP_0639 0.49 +1.3 749,355 + PP_0639 0.54 -1.2 749,421 - PP_0639 0.63 +0.7 749,652 - +0.6 749,652 - +1.4 749,704 + -2.0 750,454 - PP_0640 0.65 +0.1 750,492 - PP_0640 0.69 +0.4 750,593 + PP_0640 0.77 +0.9 750,616 + PP_0640 0.79 -0.4 750,617 - PP_0640 0.79 -2.4 750,658 - PP_0640 0.83 +0.3
Or see this region's nucleotide sequence