Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0631 and PP_0632 overlap by 1 nucleotides PP_0632 and PP_0633 are separated by 2 nucleotides PP_0633 and PP_0634 are separated by 216 nucleotides PP_0634 and PP_t12 are separated by 71 nucleotides
PP_0631: PP_0631 - Dephospho-CoA kinase, at 737,926 to 738,549
_0631
PP_0632: PP_0632 - leader peptidase/N-methyltransferase, at 738,549 to 739,415
_0632
PP_0633: PP_0633 - Type 4 fimbrial assembly protein PilC, at 739,418 to 740,626
_0633
PP_0634: PP_0634 - Fimbrial protein, at 740,843 to 741,253
_0634
PP_t12: PP_t12 - tRNA-Thr, at 741,325 to 741,400
_t12
Position (kb) 739
740
741 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 738.572 kb on - strand at 738.572 kb on - strand at 738.572 kb on - strand at 738.572 kb on - strand at 738.581 kb on - strand at 738.583 kb on - strand at 738.583 kb on - strand at 738.628 kb on + strand at 738.628 kb on + strand at 738.628 kb on + strand at 738.829 kb on + strand, within PP_0632 at 738.829 kb on + strand, within PP_0632 at 739.056 kb on + strand, within PP_0632 at 739.056 kb on + strand, within PP_0632 at 739.057 kb on - strand, within PP_0632 at 739.150 kb on + strand, within PP_0632 at 739.263 kb on + strand, within PP_0632 at 739.264 kb on - strand, within PP_0632 at 739.264 kb on - strand at 739.264 kb on - strand, within PP_0632 at 739.264 kb on - strand, within PP_0632 at 739.332 kb on - strand at 739.332 kb on - strand at 739.378 kb on + strand at 739.378 kb on + strand at 739.379 kb on - strand at 739.379 kb on - strand at 739.379 kb on - strand at 739.379 kb on - strand at 739.379 kb on - strand at 739.379 kb on - strand at 739.407 kb on + strand at 739.429 kb on + strand at 739.429 kb on + strand at 739.430 kb on - strand at 739.430 kb on - strand at 739.430 kb on - strand at 739.452 kb on + strand at 739.453 kb on - strand at 739.453 kb on - strand at 739.789 kb on - strand, within PP_0633 at 739.908 kb on + strand, within PP_0633 at 740.119 kb on - strand at 740.225 kb on + strand, within PP_0633 at 740.239 kb on - strand, within PP_0633 at 740.239 kb on - strand, within PP_0633 at 740.239 kb on - strand, within PP_0633 at 740.239 kb on - strand, within PP_0633 at 740.536 kb on - strand at 740.536 kb on - strand at 740.604 kb on + strand at 740.604 kb on + strand at 740.604 kb on + strand at 740.710 kb on + strand at 740.711 kb on - strand at 740.715 kb on + strand at 740.715 kb on + strand at 740.716 kb on - strand at 740.716 kb on - strand at 740.716 kb on - strand at 740.836 kb on + strand at 740.836 kb on + strand at 740.836 kb on + strand at 740.836 kb on + strand at 740.836 kb on + strand at 740.836 kb on + strand at 740.837 kb on - strand at 740.837 kb on - strand at 740.837 kb on - strand at 740.861 kb on - strand at 740.930 kb on + strand, within PP_0634 at 740.930 kb on + strand, within PP_0634 at 740.930 kb on + strand, within PP_0634 at 740.931 kb on - strand, within PP_0634 at 741.030 kb on + strand, within PP_0634 at 741.030 kb on + strand, within PP_0634 at 741.030 kb on + strand, within PP_0634 at 741.031 kb on - strand, within PP_0634 at 741.031 kb on - strand, within PP_0634 at 741.040 kb on - strand, within PP_0634 at 741.040 kb on - strand, within PP_0634 at 741.266 kb on - strand at 741.266 kb on - strand at 741.266 kb on - strand at 741.310 kb on + strand at 741.311 kb on - strand at 741.311 kb on - strand at 741.311 kb on - strand at 741.332 kb on + strand at 741.360 kb on + strand, within PP_t12 at 741.415 kb on - strand at 741.443 kb on + strand at 741.443 kb on + strand at 741.443 kb on + strand at 741.443 kb on + strand at 741.443 kb on + strand at 741.444 kb on - strand at 741.444 kb on - strand at 741.444 kb on - strand at 741.444 kb on - strand at 741.500 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 738,572 - -1.6 738,572 - -0.3 738,572 - +1.4 738,572 - -1.5 738,581 - +0.9 738,583 - -0.0 738,583 - -2.4 738,628 + -2.2 738,628 + +0.1 738,628 + -0.6 738,829 + PP_0632 0.32 -0.6 738,829 + PP_0632 0.32 -0.6 739,056 + PP_0632 0.58 -1.0 739,056 + PP_0632 0.58 -1.0 739,057 - PP_0632 0.59 +0.1 739,150 + PP_0632 0.69 +0.7 739,263 + PP_0632 0.82 +0.1 739,264 - PP_0632 0.82 +1.0 739,264 - +2.3 739,264 - PP_0632 0.82 +1.2 739,264 - PP_0632 0.82 -1.2 739,332 - -0.2 739,332 - -3.0 739,378 + +1.5 739,378 + +0.1 739,379 - +1.0 739,379 - -1.8 739,379 - -0.9 739,379 - +0.8 739,379 - -0.3 739,379 - -0.5 739,407 + -3.7 739,429 + -2.3 739,429 + +0.2 739,430 - +0.2 739,430 - -3.5 739,430 - -0.3 739,452 + -1.2 739,453 - -2.8 739,453 - -1.7 739,789 - PP_0633 0.31 -0.8 739,908 + PP_0633 0.41 -2.3 740,119 - +1.3 740,225 + PP_0633 0.67 -0.4 740,239 - PP_0633 0.68 -1.4 740,239 - PP_0633 0.68 -2.4 740,239 - PP_0633 0.68 +0.2 740,239 - PP_0633 0.68 -2.0 740,536 - -1.3 740,536 - -0.6 740,604 + -3.2 740,604 + -0.1 740,604 + -0.2 740,710 + -1.4 740,711 - +0.1 740,715 + +2.1 740,715 + +0.8 740,716 - -0.5 740,716 - -1.1 740,716 - -1.7 740,836 + -0.3 740,836 + -0.1 740,836 + -1.8 740,836 + +0.1 740,836 + +1.3 740,836 + -2.1 740,837 - +0.1 740,837 - -1.3 740,837 - +0.0 740,861 - -1.4 740,930 + PP_0634 0.21 -1.4 740,930 + PP_0634 0.21 -0.1 740,930 + PP_0634 0.21 -1.7 740,931 - PP_0634 0.21 -0.9 741,030 + PP_0634 0.45 -2.4 741,030 + PP_0634 0.45 +0.2 741,030 + PP_0634 0.45 -0.5 741,031 - PP_0634 0.46 +0.9 741,031 - PP_0634 0.46 -2.2 741,040 - PP_0634 0.48 +0.3 741,040 - PP_0634 0.48 +0.0 741,266 - +0.4 741,266 - -0.2 741,266 - +0.8 741,310 + -1.6 741,311 - +1.1 741,311 - +0.8 741,311 - -3.2 741,332 + +0.4 741,360 + PP_t12 0.46 -0.6 741,415 - -2.5 741,443 + +0.4 741,443 + -2.5 741,443 + +2.3 741,443 + -0.5 741,443 + +0.8 741,444 - -1.1 741,444 - -2.5 741,444 - -1.3 741,444 - -0.6 741,500 - -0.0
Or see this region's nucleotide sequence