Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0590 and PP_0591 are separated by 20 nucleotides PP_0591 and PP_0592 are separated by 85 nucleotides
PP_0590: PP_0590 - Transcriptional regulator, ArsR family, at 688,955 to 689,668
_0590
PP_0591: PP_0591 - Adenine deaminase, at 689,689 to 690,636
_0591
PP_0592: PP_0592 - Oxidoreductase, short chain dehydrogenase/reductase family, at 690,722 to 691,408
_0592
Position (kb) 689
690
691 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 688.793 kb on + strand at 688.793 kb on + strand at 688.793 kb on + strand at 688.793 kb on + strand at 688.817 kb on + strand at 688.817 kb on + strand at 688.818 kb on - strand at 688.859 kb on + strand at 688.860 kb on - strand at 688.860 kb on - strand at 688.860 kb on - strand at 688.861 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.947 kb on - strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.972 kb on + strand at 688.972 kb on + strand at 688.972 kb on + strand at 688.973 kb on - strand at 688.973 kb on - strand at 688.973 kb on - strand at 689.071 kb on - strand, within PP_0590 at 689.165 kb on + strand, within PP_0590 at 689.165 kb on + strand, within PP_0590 at 689.165 kb on + strand, within PP_0590 at 689.166 kb on - strand, within PP_0590 at 689.202 kb on + strand, within PP_0590 at 689.220 kb on + strand, within PP_0590 at 689.220 kb on + strand, within PP_0590 at 689.221 kb on - strand, within PP_0590 at 689.242 kb on + strand, within PP_0590 at 689.339 kb on + strand, within PP_0590 at 689.340 kb on - strand, within PP_0590 at 689.340 kb on - strand, within PP_0590 at 689.340 kb on - strand, within PP_0590 at 689.435 kb on + strand, within PP_0590 at 689.435 kb on + strand, within PP_0590 at 689.435 kb on + strand, within PP_0590 at 689.436 kb on - strand, within PP_0590 at 689.602 kb on + strand at 689.602 kb on + strand at 689.602 kb on + strand at 689.603 kb on - strand at 689.603 kb on - strand at 689.603 kb on - strand at 689.603 kb on - strand at 689.637 kb on + strand at 689.686 kb on + strand at 689.686 kb on + strand at 689.687 kb on - strand at 689.761 kb on - strand at 689.790 kb on - strand, within PP_0591 at 689.874 kb on + strand, within PP_0591 at 689.991 kb on + strand, within PP_0591 at 689.991 kb on + strand, within PP_0591 at 689.991 kb on + strand, within PP_0591 at 689.992 kb on - strand, within PP_0591 at 690.030 kb on - strand, within PP_0591 at 690.396 kb on - strand, within PP_0591 at 690.414 kb on - strand, within PP_0591 at 690.414 kb on - strand, within PP_0591 at 690.414 kb on - strand, within PP_0591 at 690.453 kb on - strand, within PP_0591 at 690.455 kb on + strand, within PP_0591 at 690.491 kb on + strand, within PP_0591 at 690.491 kb on + strand at 690.492 kb on - strand, within PP_0591 at 690.632 kb on + strand at 690.632 kb on + strand at 690.632 kb on + strand at 690.632 kb on + strand at 690.632 kb on + strand at 690.632 kb on + strand at 690.632 kb on + strand at 690.632 kb on + strand at 690.632 kb on + strand at 690.632 kb on + strand at 690.632 kb on + strand at 690.632 kb on + strand at 690.633 kb on - strand at 690.633 kb on - strand at 690.633 kb on - strand at 690.633 kb on - strand at 690.633 kb on - strand at 690.633 kb on - strand at 690.633 kb on - strand at 690.633 kb on - strand at 690.633 kb on - strand at 690.633 kb on - strand at 690.633 kb on - strand at 690.633 kb on - strand at 690.633 kb on - strand at 690.636 kb on + strand at 690.637 kb on - strand at 690.673 kb on + strand at 690.674 kb on - strand at 690.674 kb on - strand at 690.674 kb on - strand at 690.747 kb on + strand at 690.748 kb on - strand at 690.960 kb on + strand, within PP_0592 at 690.960 kb on + strand, within PP_0592 at 690.960 kb on + strand, within PP_0592 at 690.961 kb on - strand, within PP_0592 at 690.961 kb on - strand, within PP_0592 at 691.044 kb on - strand, within PP_0592 at 691.124 kb on + strand, within PP_0592 at 691.175 kb on + strand, within PP_0592 at 691.176 kb on - strand, within PP_0592 at 691.176 kb on - strand, within PP_0592 at 691.176 kb on - strand, within PP_0592 at 691.402 kb on + strand at 691.450 kb on + strand at 691.450 kb on + strand at 691.450 kb on + strand at 691.450 kb on + strand at 691.450 kb on + strand at 691.450 kb on + strand at 691.451 kb on - strand at 691.451 kb on - strand at 691.451 kb on - strand at 691.451 kb on - strand at 691.451 kb on - strand at 691.465 kb on - strand at 691.465 kb on - strand at 691.575 kb on + strand at 691.575 kb on + strand at 691.576 kb on - strand at 691.576 kb on - strand at 691.576 kb on - strand at 691.576 kb on - strand at 691.631 kb on + strand at 691.631 kb on + strand at 691.632 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 688,793 + +0.2 688,793 + -0.2 688,793 + +1.2 688,793 + -0.5 688,817 + +1.2 688,817 + -0.7 688,818 - +0.4 688,859 + +0.6 688,860 - -1.4 688,860 - -2.8 688,860 - -1.4 688,861 + +2.0 688,946 + +0.2 688,946 + +0.7 688,946 + -0.8 688,946 + -1.9 688,946 + -1.6 688,947 - +0.6 688,948 + -2.6 688,948 + +1.5 688,948 + +1.2 688,948 + +0.5 688,948 + -1.0 688,948 + +1.4 688,949 - +0.3 688,949 - +0.4 688,949 - -1.8 688,949 - +1.2 688,949 - +0.5 688,949 - -1.3 688,949 - +0.5 688,949 - +0.6 688,972 + -1.3 688,972 + +2.0 688,972 + -1.9 688,973 - +0.2 688,973 - +0.1 688,973 - -1.9 689,071 - PP_0590 0.16 +0.1 689,165 + PP_0590 0.29 +1.5 689,165 + PP_0590 0.29 -2.8 689,165 + PP_0590 0.29 -2.6 689,166 - PP_0590 0.30 +0.5 689,202 + PP_0590 0.35 -0.2 689,220 + PP_0590 0.37 +1.1 689,220 + PP_0590 0.37 +0.6 689,221 - PP_0590 0.37 +0.3 689,242 + PP_0590 0.40 -2.6 689,339 + PP_0590 0.54 +1.3 689,340 - PP_0590 0.54 -1.5 689,340 - PP_0590 0.54 -2.7 689,340 - PP_0590 0.54 +0.9 689,435 + PP_0590 0.67 -0.0 689,435 + PP_0590 0.67 -1.7 689,435 + PP_0590 0.67 -1.1 689,436 - PP_0590 0.67 +0.5 689,602 + -0.6 689,602 + +1.2 689,602 + +0.4 689,603 - +0.0 689,603 - -1.1 689,603 - +0.4 689,603 - +1.6 689,637 + -1.0 689,686 + -4.0 689,686 + +1.1 689,687 - +0.9 689,761 - +0.8 689,790 - PP_0591 0.11 -0.6 689,874 + PP_0591 0.20 +0.2 689,991 + PP_0591 0.32 +0.5 689,991 + PP_0591 0.32 +1.2 689,991 + PP_0591 0.32 -1.5 689,992 - PP_0591 0.32 -1.6 690,030 - PP_0591 0.36 -1.9 690,396 - PP_0591 0.75 -0.6 690,414 - PP_0591 0.76 -2.9 690,414 - PP_0591 0.76 -1.4 690,414 - PP_0591 0.76 -4.1 690,453 - PP_0591 0.81 -0.4 690,455 + PP_0591 0.81 -3.1 690,491 + PP_0591 0.85 +1.5 690,491 + +1.2 690,492 - PP_0591 0.85 -1.6 690,632 + -2.5 690,632 + -2.5 690,632 + -2.6 690,632 + +0.9 690,632 + +1.5 690,632 + -0.8 690,632 + +1.5 690,632 + -0.9 690,632 + +2.5 690,632 + +0.8 690,632 + +0.3 690,632 + -1.9 690,633 - -0.5 690,633 - -0.2 690,633 - +0.4 690,633 - +0.4 690,633 - -3.4 690,633 - +0.5 690,633 - +1.1 690,633 - +0.2 690,633 - -0.6 690,633 - -2.4 690,633 - +1.2 690,633 - -0.4 690,633 - +0.6 690,636 + -1.8 690,637 - -0.5 690,673 + -1.5 690,674 - +0.9 690,674 - +1.1 690,674 - -2.5 690,747 + +0.2 690,748 - +0.0 690,960 + PP_0592 0.35 +0.5 690,960 + PP_0592 0.35 +1.8 690,960 + PP_0592 0.35 -0.6 690,961 - PP_0592 0.35 +0.3 690,961 - PP_0592 0.35 -1.4 691,044 - PP_0592 0.47 +0.3 691,124 + PP_0592 0.59 -0.1 691,175 + PP_0592 0.66 +0.5 691,176 - PP_0592 0.66 -1.3 691,176 - PP_0592 0.66 +1.8 691,176 - PP_0592 0.66 -0.9 691,402 + +0.5 691,450 + -2.6 691,450 + +0.4 691,450 + -1.4 691,450 + -0.2 691,450 + -0.8 691,450 + -0.1 691,451 - +0.8 691,451 - -2.1 691,451 - -0.3 691,451 - -0.4 691,451 - -3.0 691,465 - +1.0 691,465 - +1.6 691,575 + +0.9 691,575 + -2.9 691,576 - +0.9 691,576 - -1.5 691,576 - -0.2 691,576 - -1.4 691,631 + +1.2 691,631 + -0.9 691,632 - -0.0
Or see this region's nucleotide sequence