Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0572 and PP_0573 are separated by 32 nucleotides PP_0573 and PP_0574 are separated by 72 nucleotides PP_0574 and PP_0575 are separated by 118 nucleotides
PP_0572: PP_0572 - peptidoglycan glycosyltransferase, at 668,559 to 670,913
_0572
PP_0573: PP_0573 - conserved protein of unknown function, at 670,946 to 672,670
_0573
PP_0574: PP_0574 - DNA-binding response regulator, LuxR family, at 672,743 to 673,519
_0574
PP_0575: PP_0575 - conserved membrane protein of unknown function, at 673,638 to 674,108
_0575
Position (kb) 670
671
672
673 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 670.035 kb on - strand, within PP_0572 at 670.035 kb on - strand, within PP_0572 at 670.178 kb on - strand, within PP_0572 at 670.178 kb on - strand, within PP_0572 at 670.483 kb on + strand, within PP_0572 at 670.483 kb on + strand, within PP_0572 at 670.483 kb on + strand, within PP_0572 at 670.483 kb on + strand, within PP_0572 at 670.484 kb on - strand, within PP_0572 at 670.738 kb on + strand at 670.738 kb on + strand at 670.738 kb on + strand at 670.739 kb on - strand at 670.911 kb on + strand at 670.911 kb on + strand at 670.911 kb on + strand at 670.911 kb on + strand at 670.911 kb on + strand at 670.911 kb on + strand at 670.912 kb on - strand at 670.941 kb on + strand at 670.941 kb on + strand at 670.942 kb on - strand at 671.005 kb on + strand at 671.006 kb on - strand at 671.096 kb on + strand at 671.096 kb on + strand at 671.097 kb on - strand at 671.097 kb on - strand at 671.139 kb on - strand, within PP_0573 at 671.160 kb on + strand, within PP_0573 at 671.160 kb on + strand, within PP_0573 at 671.161 kb on - strand, within PP_0573 at 671.282 kb on + strand, within PP_0573 at 671.282 kb on + strand, within PP_0573 at 671.282 kb on + strand, within PP_0573 at 671.331 kb on - strand, within PP_0573 at 671.331 kb on - strand, within PP_0573 at 671.331 kb on - strand, within PP_0573 at 671.331 kb on - strand, within PP_0573 at 671.370 kb on - strand, within PP_0573 at 671.381 kb on + strand, within PP_0573 at 671.381 kb on + strand, within PP_0573 at 671.381 kb on + strand, within PP_0573 at 671.381 kb on + strand, within PP_0573 at 671.382 kb on - strand, within PP_0573 at 671.382 kb on - strand, within PP_0573 at 671.382 kb on - strand, within PP_0573 at 671.387 kb on + strand, within PP_0573 at 671.388 kb on - strand, within PP_0573 at 671.388 kb on - strand, within PP_0573 at 671.444 kb on + strand, within PP_0573 at 671.445 kb on - strand, within PP_0573 at 671.445 kb on - strand, within PP_0573 at 671.448 kb on + strand, within PP_0573 at 671.448 kb on + strand, within PP_0573 at 671.448 kb on + strand, within PP_0573 at 671.448 kb on + strand, within PP_0573 at 671.448 kb on + strand, within PP_0573 at 671.448 kb on + strand, within PP_0573 at 671.448 kb on + strand, within PP_0573 at 671.449 kb on - strand, within PP_0573 at 671.457 kb on - strand, within PP_0573 at 671.492 kb on + strand, within PP_0573 at 671.493 kb on - strand, within PP_0573 at 671.493 kb on - strand, within PP_0573 at 671.558 kb on + strand, within PP_0573 at 671.559 kb on - strand, within PP_0573 at 671.559 kb on - strand, within PP_0573 at 671.807 kb on + strand at 671.807 kb on + strand, within PP_0573 at 671.811 kb on - strand, within PP_0573 at 671.825 kb on + strand, within PP_0573 at 671.826 kb on - strand, within PP_0573 at 671.826 kb on - strand, within PP_0573 at 671.826 kb on - strand, within PP_0573 at 671.835 kb on - strand, within PP_0573 at 671.835 kb on - strand, within PP_0573 at 671.904 kb on + strand, within PP_0573 at 671.904 kb on + strand, within PP_0573 at 671.904 kb on + strand, within PP_0573 at 671.905 kb on - strand, within PP_0573 at 671.955 kb on - strand, within PP_0573 at 672.023 kb on + strand, within PP_0573 at 672.023 kb on + strand, within PP_0573 at 672.080 kb on + strand, within PP_0573 at 672.080 kb on + strand, within PP_0573 at 672.089 kb on + strand, within PP_0573 at 672.089 kb on + strand, within PP_0573 at 672.089 kb on + strand, within PP_0573 at 672.089 kb on + strand, within PP_0573 at 672.089 kb on + strand, within PP_0573 at 672.089 kb on + strand, within PP_0573 at 672.089 kb on + strand, within PP_0573 at 672.089 kb on + strand, within PP_0573 at 672.089 kb on + strand, within PP_0573 at 672.090 kb on - strand, within PP_0573 at 672.090 kb on - strand, within PP_0573 at 672.090 kb on - strand, within PP_0573 at 672.090 kb on - strand, within PP_0573 at 672.090 kb on - strand, within PP_0573 at 672.090 kb on - strand, within PP_0573 at 672.210 kb on - strand, within PP_0573 at 672.210 kb on - strand, within PP_0573 at 672.299 kb on + strand, within PP_0573 at 672.299 kb on + strand, within PP_0573 at 672.299 kb on + strand, within PP_0573 at 672.413 kb on + strand, within PP_0573 at 672.425 kb on + strand, within PP_0573 at 672.426 kb on - strand, within PP_0573 at 672.426 kb on - strand, within PP_0573 at 672.439 kb on + strand, within PP_0573 at 672.440 kb on - strand, within PP_0573 at 672.440 kb on - strand, within PP_0573 at 672.464 kb on + strand, within PP_0573 at 672.464 kb on + strand, within PP_0573 at 672.464 kb on + strand, within PP_0573 at 672.465 kb on - strand, within PP_0573 at 672.496 kb on + strand, within PP_0573 at 672.497 kb on - strand, within PP_0573 at 672.669 kb on - strand at 672.669 kb on - strand at 672.679 kb on + strand at 672.679 kb on + strand at 672.679 kb on + strand at 672.679 kb on + strand at 672.679 kb on + strand at 672.679 kb on + strand at 672.680 kb on - strand at 672.680 kb on - strand at 672.680 kb on - strand at 672.728 kb on - strand at 672.728 kb on - strand at 672.728 kb on - strand at 672.820 kb on + strand at 672.820 kb on + strand at 672.820 kb on + strand at 672.820 kb on + strand at 672.821 kb on - strand, within PP_0574 at 672.821 kb on - strand, within PP_0574 at 672.836 kb on + strand, within PP_0574 at 672.836 kb on + strand at 672.849 kb on + strand, within PP_0574 at 672.849 kb on + strand, within PP_0574 at 672.849 kb on + strand, within PP_0574 at 672.849 kb on + strand, within PP_0574 at 672.850 kb on - strand, within PP_0574 at 672.850 kb on - strand, within PP_0574 at 672.850 kb on - strand, within PP_0574 at 672.850 kb on - strand, within PP_0574 at 672.850 kb on - strand, within PP_0574 at 672.850 kb on - strand, within PP_0574 at 672.897 kb on + strand, within PP_0574 at 672.898 kb on - strand, within PP_0574 at 672.917 kb on + strand, within PP_0574 at 673.191 kb on + strand, within PP_0574 at 673.191 kb on + strand, within PP_0574 at 673.191 kb on + strand, within PP_0574 at 673.192 kb on - strand, within PP_0574 at 673.192 kb on - strand, within PP_0574 at 673.194 kb on + strand, within PP_0574 at 673.194 kb on + strand, within PP_0574 at 673.195 kb on - strand, within PP_0574 at 673.195 kb on - strand, within PP_0574 at 673.215 kb on - strand, within PP_0574 at 673.215 kb on - strand, within PP_0574 at 673.380 kb on + strand, within PP_0574 at 673.380 kb on + strand, within PP_0574 at 673.380 kb on + strand, within PP_0574 at 673.380 kb on + strand, within PP_0574 at 673.380 kb on + strand, within PP_0574 at 673.380 kb on + strand, within PP_0574 at 673.380 kb on + strand, within PP_0574 at 673.381 kb on - strand, within PP_0574 at 673.381 kb on - strand, within PP_0574 at 673.381 kb on - strand, within PP_0574 at 673.381 kb on - strand, within PP_0574 at 673.425 kb on + strand, within PP_0574 at 673.425 kb on + strand, within PP_0574 at 673.425 kb on + strand, within PP_0574 at 673.425 kb on + strand, within PP_0574 at 673.425 kb on + strand, within PP_0574 at 673.426 kb on - strand, within PP_0574 at 673.426 kb on - strand, within PP_0574 at 673.426 kb on - strand at 673.426 kb on - strand, within PP_0574 at 673.426 kb on - strand, within PP_0574 at 673.496 kb on + strand at 673.496 kb on + strand at 673.497 kb on - strand at 673.497 kb on - strand at 673.537 kb on + strand at 673.538 kb on - strand at 673.539 kb on + strand at 673.574 kb on + strand at 673.574 kb on + strand at 673.575 kb on - strand at 673.580 kb on + strand at 673.581 kb on - strand at 673.597 kb on + strand at 673.597 kb on + strand at 673.597 kb on + strand at 673.598 kb on - strand at 673.598 kb on - strand at 673.598 kb on - strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.602 kb on - strand at 673.602 kb on - strand at 673.602 kb on - strand at 673.612 kb on + strand at 673.612 kb on + strand at 673.612 kb on + strand at 673.613 kb on - strand at 673.613 kb on - strand at 673.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 670,035 - PP_0572 0.63 -1.0 670,035 - PP_0572 0.63 +0.1 670,178 - PP_0572 0.69 -1.4 670,178 - PP_0572 0.69 -2.1 670,483 + PP_0572 0.82 -0.3 670,483 + PP_0572 0.82 -2.0 670,483 + PP_0572 0.82 -3.5 670,483 + PP_0572 0.82 -1.4 670,484 - PP_0572 0.82 -1.5 670,738 + +2.8 670,738 + -1.5 670,738 + -3.0 670,739 - -1.2 670,911 + -2.8 670,911 + -3.2 670,911 + -0.5 670,911 + -0.1 670,911 + +2.2 670,911 + -2.9 670,912 - -0.1 670,941 + -3.6 670,941 + -3.8 670,942 - -0.4 671,005 + -1.2 671,006 - -0.4 671,096 + -3.1 671,096 + -0.5 671,097 - -0.6 671,097 - -1.2 671,139 - PP_0573 0.11 -3.2 671,160 + PP_0573 0.12 -0.9 671,160 + PP_0573 0.12 -1.4 671,161 - PP_0573 0.12 +0.0 671,282 + PP_0573 0.19 -0.9 671,282 + PP_0573 0.19 -3.0 671,282 + PP_0573 0.19 -2.8 671,331 - PP_0573 0.22 -2.5 671,331 - PP_0573 0.22 -0.3 671,331 - PP_0573 0.22 +2.0 671,331 - PP_0573 0.22 +0.6 671,370 - PP_0573 0.25 -0.8 671,381 + PP_0573 0.25 -2.3 671,381 + PP_0573 0.25 -1.3 671,381 + PP_0573 0.25 +1.2 671,381 + PP_0573 0.25 +1.4 671,382 - PP_0573 0.25 +0.4 671,382 - PP_0573 0.25 -0.4 671,382 - PP_0573 0.25 +1.0 671,387 + PP_0573 0.26 -2.0 671,388 - PP_0573 0.26 +1.0 671,388 - PP_0573 0.26 -3.2 671,444 + PP_0573 0.29 -0.8 671,445 - PP_0573 0.29 -2.0 671,445 - PP_0573 0.29 -2.9 671,448 + PP_0573 0.29 -2.5 671,448 + PP_0573 0.29 -0.4 671,448 + PP_0573 0.29 +1.0 671,448 + PP_0573 0.29 -1.0 671,448 + PP_0573 0.29 -0.5 671,448 + PP_0573 0.29 -0.8 671,448 + PP_0573 0.29 -2.1 671,449 - PP_0573 0.29 +0.9 671,457 - PP_0573 0.30 +1.3 671,492 + PP_0573 0.32 -0.4 671,493 - PP_0573 0.32 +0.2 671,493 - PP_0573 0.32 +1.2 671,558 + PP_0573 0.35 -0.2 671,559 - PP_0573 0.36 +0.5 671,559 - PP_0573 0.36 +0.3 671,807 + +0.2 671,807 + PP_0573 0.50 -3.4 671,811 - PP_0573 0.50 -0.1 671,825 + PP_0573 0.51 -1.6 671,826 - PP_0573 0.51 -0.0 671,826 - PP_0573 0.51 -0.7 671,826 - PP_0573 0.51 -3.5 671,835 - PP_0573 0.52 +0.7 671,835 - PP_0573 0.52 -2.2 671,904 + PP_0573 0.56 +1.3 671,904 + PP_0573 0.56 -1.1 671,904 + PP_0573 0.56 -2.2 671,905 - PP_0573 0.56 -2.1 671,955 - PP_0573 0.58 +1.9 672,023 + PP_0573 0.62 +1.4 672,023 + PP_0573 0.62 +1.4 672,080 + PP_0573 0.66 -0.4 672,080 + PP_0573 0.66 -3.5 672,089 + PP_0573 0.66 +0.5 672,089 + PP_0573 0.66 +0.4 672,089 + PP_0573 0.66 -0.1 672,089 + PP_0573 0.66 -2.0 672,089 + PP_0573 0.66 +0.5 672,089 + PP_0573 0.66 -0.1 672,089 + PP_0573 0.66 -4.1 672,089 + PP_0573 0.66 -0.0 672,089 + PP_0573 0.66 +0.0 672,090 - PP_0573 0.66 -0.4 672,090 - PP_0573 0.66 -1.0 672,090 - PP_0573 0.66 -1.0 672,090 - PP_0573 0.66 -0.0 672,090 - PP_0573 0.66 -0.1 672,090 - PP_0573 0.66 -0.2 672,210 - PP_0573 0.73 -0.9 672,210 - PP_0573 0.73 +0.2 672,299 + PP_0573 0.78 -0.9 672,299 + PP_0573 0.78 -2.0 672,299 + PP_0573 0.78 -3.5 672,413 + PP_0573 0.85 -0.7 672,425 + PP_0573 0.86 -1.7 672,426 - PP_0573 0.86 +0.6 672,426 - PP_0573 0.86 -3.1 672,439 + PP_0573 0.87 -1.0 672,440 - PP_0573 0.87 -0.8 672,440 - PP_0573 0.87 -1.5 672,464 + PP_0573 0.88 -0.3 672,464 + PP_0573 0.88 -1.3 672,464 + PP_0573 0.88 +0.9 672,465 - PP_0573 0.88 -0.1 672,496 + PP_0573 0.90 -2.2 672,497 - PP_0573 0.90 -3.0 672,669 - -0.4 672,669 - +2.1 672,679 + +1.4 672,679 + -3.4 672,679 + -0.4 672,679 + -2.2 672,679 + +0.0 672,679 + -0.0 672,680 - +1.5 672,680 - -0.4 672,680 - -0.8 672,728 - -0.8 672,728 - -0.1 672,728 - -1.4 672,820 + +0.1 672,820 + +0.7 672,820 + +0.1 672,820 + -1.6 672,821 - PP_0574 0.10 -1.4 672,821 - PP_0574 0.10 -0.2 672,836 + PP_0574 0.12 -0.4 672,836 + +1.2 672,849 + PP_0574 0.14 -1.4 672,849 + PP_0574 0.14 -0.8 672,849 + PP_0574 0.14 +0.1 672,849 + PP_0574 0.14 -2.7 672,850 - PP_0574 0.14 -3.6 672,850 - PP_0574 0.14 +0.3 672,850 - PP_0574 0.14 -3.0 672,850 - PP_0574 0.14 -0.7 672,850 - PP_0574 0.14 -1.0 672,850 - PP_0574 0.14 -0.2 672,897 + PP_0574 0.20 +1.5 672,898 - PP_0574 0.20 -3.5 672,917 + PP_0574 0.22 +0.3 673,191 + PP_0574 0.58 +0.8 673,191 + PP_0574 0.58 +0.6 673,191 + PP_0574 0.58 -2.6 673,192 - PP_0574 0.58 -0.1 673,192 - PP_0574 0.58 -0.9 673,194 + PP_0574 0.58 +1.2 673,194 + PP_0574 0.58 -0.0 673,195 - PP_0574 0.58 +0.7 673,195 - PP_0574 0.58 +0.5 673,215 - PP_0574 0.61 -0.4 673,215 - PP_0574 0.61 -0.5 673,380 + PP_0574 0.82 -3.0 673,380 + PP_0574 0.82 +0.9 673,380 + PP_0574 0.82 -0.1 673,380 + PP_0574 0.82 -0.0 673,380 + PP_0574 0.82 -0.1 673,380 + PP_0574 0.82 -0.1 673,380 + PP_0574 0.82 -1.5 673,381 - PP_0574 0.82 +0.4 673,381 - PP_0574 0.82 -0.7 673,381 - PP_0574 0.82 -0.1 673,381 - PP_0574 0.82 -1.0 673,425 + PP_0574 0.88 +1.1 673,425 + PP_0574 0.88 +0.2 673,425 + PP_0574 0.88 +0.2 673,425 + PP_0574 0.88 -0.5 673,425 + PP_0574 0.88 +0.3 673,426 - PP_0574 0.88 -0.8 673,426 - PP_0574 0.88 -0.6 673,426 - +0.2 673,426 - PP_0574 0.88 -0.2 673,426 - PP_0574 0.88 -0.8 673,496 + -2.9 673,496 + -0.3 673,497 - -1.6 673,497 - +0.3 673,537 + +1.1 673,538 - -1.9 673,539 + +0.1 673,574 + -0.8 673,574 + -2.3 673,575 - +0.2 673,580 + +1.6 673,581 - +1.6 673,597 + +1.2 673,597 + -1.2 673,597 + +0.3 673,598 - -3.5 673,598 - -2.9 673,598 - +0.9 673,601 + -1.6 673,601 + -3.0 673,601 + -0.5 673,601 + -1.2 673,601 + -0.2 673,601 + -0.5 673,601 + -0.6 673,602 - +1.9 673,602 - -0.8 673,602 - -0.4 673,612 + -2.2 673,612 + -3.9 673,612 + +0.8 673,613 - -0.5 673,613 - +0.4 673,613 - +0.2
Or see this region's nucleotide sequence