Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0559 and PP_0560 are separated by 99 nucleotides PP_0560 and PP_0561 are separated by 179 nucleotides PP_0561 and PP_0562 are separated by 117 nucleotides
PP_0559: PP_0559 - acetyl-CoA carboxylase - biotin carboxyl carrier subunit, at 649,695 to 650,156
_0559
PP_0560: PP_0560 - 3-dehydroquinate dehydratase 1, type II, at 650,256 to 650,711
_0560
PP_0561: PP_0561 - thiol/disulfide interchange protein 1, at 650,891 to 652,663
_0561
PP_0562: PP_0562 - Methyl-accepting chemotaxis protein CtpL, at 652,781 to 654,742
_0562
Position (kb) 650
651
652
653 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 650.767 kb on - strand at 650.831 kb on - strand at 650.831 kb on - strand at 650.846 kb on + strand at 650.893 kb on - strand at 650.894 kb on + strand at 650.894 kb on + strand at 650.948 kb on + strand at 651.174 kb on + strand, within PP_0561 at 651.263 kb on - strand, within PP_0561 at 651.354 kb on + strand, within PP_0561 at 651.509 kb on + strand, within PP_0561 at 651.548 kb on + strand, within PP_0561 at 651.549 kb on - strand, within PP_0561 at 651.703 kb on + strand, within PP_0561 at 651.704 kb on - strand, within PP_0561 at 651.704 kb on - strand, within PP_0561 at 651.705 kb on + strand, within PP_0561 at 651.705 kb on + strand, within PP_0561 at 651.705 kb on + strand, within PP_0561 at 651.705 kb on + strand, within PP_0561 at 651.706 kb on - strand, within PP_0561 at 651.706 kb on - strand, within PP_0561 at 651.706 kb on - strand, within PP_0561 at 651.706 kb on - strand, within PP_0561 at 651.706 kb on - strand, within PP_0561 at 651.706 kb on - strand, within PP_0561 at 651.706 kb on - strand, within PP_0561 at 651.734 kb on + strand, within PP_0561 at 651.911 kb on + strand, within PP_0561 at 651.932 kb on + strand, within PP_0561 at 652.017 kb on + strand, within PP_0561 at 652.017 kb on + strand, within PP_0561 at 652.214 kb on - strand, within PP_0561 at 652.214 kb on - strand at 652.214 kb on - strand, within PP_0561 at 652.303 kb on + strand, within PP_0561 at 652.303 kb on + strand, within PP_0561 at 652.304 kb on - strand, within PP_0561 at 652.335 kb on + strand, within PP_0561 at 652.335 kb on + strand, within PP_0561 at 652.336 kb on - strand, within PP_0561 at 652.336 kb on - strand, within PP_0561 at 652.336 kb on - strand, within PP_0561 at 652.408 kb on + strand, within PP_0561 at 652.452 kb on + strand, within PP_0561 at 652.452 kb on + strand, within PP_0561 at 652.452 kb on + strand, within PP_0561 at 652.452 kb on + strand, within PP_0561 at 652.452 kb on + strand, within PP_0561 at 652.455 kb on + strand at 652.455 kb on + strand, within PP_0561 at 652.455 kb on + strand, within PP_0561 at 652.455 kb on + strand, within PP_0561 at 652.533 kb on - strand at 652.634 kb on + strand at 652.716 kb on - strand at 652.716 kb on - strand at 652.735 kb on + strand at 652.736 kb on - strand at 652.736 kb on - strand at 652.736 kb on - strand at 652.747 kb on + strand at 652.850 kb on - strand at 653.286 kb on - strand, within PP_0562 at 653.602 kb on + strand, within PP_0562 at 653.603 kb on - strand, within PP_0562 at 653.603 kb on - strand, within PP_0562 at 653.603 kb on - strand, within PP_0562 at 653.634 kb on + strand, within PP_0562
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 650,767 - -0.8 650,831 - +0.4 650,831 - -0.1 650,846 + +0.7 650,893 - -0.8 650,894 + -0.5 650,894 + +1.2 650,948 + +0.2 651,174 + PP_0561 0.16 -4.0 651,263 - PP_0561 0.21 +0.6 651,354 + PP_0561 0.26 -0.6 651,509 + PP_0561 0.35 -2.8 651,548 + PP_0561 0.37 -1.8 651,549 - PP_0561 0.37 +0.2 651,703 + PP_0561 0.46 +0.1 651,704 - PP_0561 0.46 -2.9 651,704 - PP_0561 0.46 -0.1 651,705 + PP_0561 0.46 -0.5 651,705 + PP_0561 0.46 +0.1 651,705 + PP_0561 0.46 +1.2 651,705 + PP_0561 0.46 +1.3 651,706 - PP_0561 0.46 -0.4 651,706 - PP_0561 0.46 -2.1 651,706 - PP_0561 0.46 -0.8 651,706 - PP_0561 0.46 +0.8 651,706 - PP_0561 0.46 -2.0 651,706 - PP_0561 0.46 -3.0 651,706 - PP_0561 0.46 -0.8 651,734 + PP_0561 0.48 +1.2 651,911 + PP_0561 0.58 +0.1 651,932 + PP_0561 0.59 -3.3 652,017 + PP_0561 0.64 -1.0 652,017 + PP_0561 0.64 -2.4 652,214 - PP_0561 0.75 -1.9 652,214 - -0.4 652,214 - PP_0561 0.75 +1.3 652,303 + PP_0561 0.80 -0.4 652,303 + PP_0561 0.80 -1.4 652,304 - PP_0561 0.80 -2.0 652,335 + PP_0561 0.81 -2.6 652,335 + PP_0561 0.81 -0.1 652,336 - PP_0561 0.82 -2.7 652,336 - PP_0561 0.82 +0.7 652,336 - PP_0561 0.82 +0.5 652,408 + PP_0561 0.86 -1.6 652,452 + PP_0561 0.88 -2.9 652,452 + PP_0561 0.88 -0.4 652,452 + PP_0561 0.88 -0.4 652,452 + PP_0561 0.88 -2.0 652,452 + PP_0561 0.88 -1.1 652,455 + +1.8 652,455 + PP_0561 0.88 -1.7 652,455 + PP_0561 0.88 -1.4 652,455 + PP_0561 0.88 -0.9 652,533 - -1.8 652,634 + +1.7 652,716 - -0.4 652,716 - -2.1 652,735 + -0.8 652,736 - +1.9 652,736 - -0.8 652,736 - +2.1 652,747 + -2.2 652,850 - +0.8 653,286 - PP_0562 0.26 +0.4 653,602 + PP_0562 0.42 -1.5 653,603 - PP_0562 0.42 -0.4 653,603 - PP_0562 0.42 +1.2 653,603 - PP_0562 0.42 -0.1 653,634 + PP_0562 0.43 -2.5
Or see this region's nucleotide sequence