Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0543 and PP_0544 are separated by 46 nucleotides PP_0544 and PP_0545 are separated by 227 nucleotides
PP_0543: PP_0543 - ethanolamine ammonia-lyase, alpha-subunit, at 628,803 to 630,197
_0543
PP_0544: PP_0544 - Ethanolamine transporter, at 630,244 to 631,692
_0544
PP_0545: PP_0545 - aldehyde dehydrogenase, at 631,920 to 633,440
_0545
Position (kb) 630
631
632 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 629.257 kb on + strand, within PP_0543 at 629.258 kb on - strand, within PP_0543 at 629.258 kb on - strand, within PP_0543 at 629.338 kb on + strand, within PP_0543 at 629.389 kb on + strand, within PP_0543 at 629.389 kb on + strand, within PP_0543 at 629.389 kb on + strand, within PP_0543 at 629.390 kb on - strand, within PP_0543 at 629.549 kb on - strand, within PP_0543 at 629.648 kb on - strand, within PP_0543 at 629.648 kb on - strand, within PP_0543 at 630.197 kb on + strand at 630.323 kb on + strand at 630.324 kb on - strand at 630.324 kb on - strand at 630.335 kb on + strand at 630.336 kb on - strand at 630.336 kb on - strand at 630.336 kb on - strand at 630.343 kb on + strand at 630.344 kb on - strand at 630.348 kb on - strand at 630.353 kb on + strand at 630.353 kb on + strand at 630.353 kb on + strand at 630.353 kb on + strand at 630.354 kb on - strand at 630.467 kb on + strand, within PP_0544 at 630.530 kb on + strand, within PP_0544 at 630.530 kb on + strand, within PP_0544 at 630.530 kb on + strand, within PP_0544 at 630.531 kb on - strand, within PP_0544 at 630.531 kb on - strand, within PP_0544 at 630.531 kb on - strand, within PP_0544 at 630.714 kb on - strand, within PP_0544 at 630.714 kb on - strand, within PP_0544 at 630.714 kb on - strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.800 kb on + strand, within PP_0544 at 630.801 kb on - strand, within PP_0544 at 631.013 kb on + strand, within PP_0544 at 631.130 kb on - strand, within PP_0544 at 631.232 kb on + strand, within PP_0544 at 631.233 kb on - strand at 631.244 kb on + strand, within PP_0544 at 631.244 kb on + strand, within PP_0544 at 631.244 kb on + strand, within PP_0544 at 631.244 kb on + strand, within PP_0544 at 631.245 kb on - strand, within PP_0544 at 631.394 kb on + strand, within PP_0544 at 631.457 kb on + strand, within PP_0544 at 631.457 kb on + strand at 631.458 kb on - strand, within PP_0544 at 631.458 kb on - strand, within PP_0544 at 631.535 kb on + strand, within PP_0544 at 631.554 kb on - strand at 631.554 kb on - strand at 631.580 kb on - strand at 631.623 kb on - strand at 631.692 kb on + strand at 631.692 kb on + strand at 631.850 kb on + strand at 631.850 kb on + strand at 631.851 kb on - strand at 631.884 kb on + strand at 631.922 kb on - strand at 631.949 kb on - strand at 631.949 kb on - strand at 631.978 kb on + strand at 631.978 kb on + strand at 632.057 kb on - strand at 632.065 kb on + strand at 632.066 kb on - strand at 632.066 kb on - strand at 632.290 kb on + strand, within PP_0545 at 632.290 kb on + strand, within PP_0545 at 632.290 kb on + strand, within PP_0545 at 632.290 kb on + strand, within PP_0545 at 632.291 kb on - strand, within PP_0545 at 632.378 kb on - strand, within PP_0545 at 632.378 kb on - strand, within PP_0545 at 632.378 kb on - strand, within PP_0545
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 629,257 + PP_0543 0.33 -0.0 629,258 - PP_0543 0.33 -0.7 629,258 - PP_0543 0.33 -3.9 629,338 + PP_0543 0.38 +0.4 629,389 + PP_0543 0.42 +0.8 629,389 + PP_0543 0.42 -0.8 629,389 + PP_0543 0.42 -0.2 629,390 - PP_0543 0.42 -2.6 629,549 - PP_0543 0.53 -0.2 629,648 - PP_0543 0.61 +2.8 629,648 - PP_0543 0.61 +0.1 630,197 + +0.8 630,323 + +0.8 630,324 - +0.2 630,324 - +0.2 630,335 + +0.1 630,336 - -2.1 630,336 - -0.5 630,336 - +1.3 630,343 + +1.6 630,344 - +0.5 630,348 - -1.4 630,353 + +1.4 630,353 + +1.5 630,353 + -1.5 630,353 + -2.5 630,354 - +0.4 630,467 + PP_0544 0.15 -2.7 630,530 + PP_0544 0.20 +0.6 630,530 + PP_0544 0.20 +2.1 630,530 + PP_0544 0.20 -0.4 630,531 - PP_0544 0.20 +1.2 630,531 - PP_0544 0.20 -0.3 630,531 - PP_0544 0.20 +1.6 630,714 - PP_0544 0.32 +4.2 630,714 - PP_0544 0.32 -0.2 630,714 - PP_0544 0.32 +1.0 630,719 + PP_0544 0.33 -0.9 630,719 + PP_0544 0.33 +0.1 630,719 + PP_0544 0.33 -0.8 630,719 + PP_0544 0.33 -2.7 630,719 + PP_0544 0.33 -3.4 630,719 + PP_0544 0.33 -2.5 630,719 + PP_0544 0.33 -0.2 630,719 + PP_0544 0.33 +0.3 630,719 + PP_0544 0.33 +1.6 630,719 + PP_0544 0.33 +1.9 630,719 + PP_0544 0.33 +1.1 630,719 + PP_0544 0.33 -0.4 630,720 - PP_0544 0.33 +1.4 630,720 - PP_0544 0.33 -0.2 630,720 - PP_0544 0.33 -3.7 630,720 - PP_0544 0.33 -1.4 630,720 - PP_0544 0.33 +2.0 630,720 - PP_0544 0.33 -2.0 630,720 - PP_0544 0.33 -2.2 630,720 - PP_0544 0.33 +0.5 630,720 - PP_0544 0.33 +2.0 630,720 - PP_0544 0.33 -4.2 630,720 - +1.2 630,720 - PP_0544 0.33 -0.1 630,720 - PP_0544 0.33 +0.2 630,720 - PP_0544 0.33 +0.4 630,800 + PP_0544 0.38 +1.6 630,801 - PP_0544 0.38 -1.4 631,013 + PP_0544 0.53 +1.7 631,130 - PP_0544 0.61 +0.3 631,232 + PP_0544 0.68 -0.0 631,233 - +0.2 631,244 + PP_0544 0.69 -0.8 631,244 + PP_0544 0.69 +0.9 631,244 + PP_0544 0.69 +0.9 631,244 + PP_0544 0.69 +0.9 631,245 - PP_0544 0.69 +1.5 631,394 + PP_0544 0.79 -2.5 631,457 + PP_0544 0.84 -1.8 631,457 + +4.0 631,458 - PP_0544 0.84 -0.1 631,458 - PP_0544 0.84 -0.4 631,535 + PP_0544 0.89 +0.3 631,554 - -2.5 631,554 - +1.0 631,580 - -0.5 631,623 - +0.7 631,692 + +0.6 631,692 + +0.7 631,850 + -2.8 631,850 + -0.6 631,851 - -0.7 631,884 + +2.5 631,922 - +1.1 631,949 - +0.6 631,949 - +0.5 631,978 + +0.9 631,978 + +1.5 632,057 - +0.2 632,065 + -1.1 632,066 - +2.0 632,066 - +0.0 632,290 + PP_0545 0.24 +0.4 632,290 + PP_0545 0.24 +1.0 632,290 + PP_0545 0.24 +0.2 632,290 + PP_0545 0.24 +0.1 632,291 - PP_0545 0.24 +0.7 632,378 - PP_0545 0.30 +1.9 632,378 - PP_0545 0.30 +0.8 632,378 - PP_0545 0.30 +0.1
Or see this region's nucleotide sequence