Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0489 and PP_0490 overlap by 1 nucleotides PP_0490 and PP_0491 overlap by 4 nucleotides PP_0491 and PP_0492 overlap by 26 nucleotides
PP_0489: PP_0489 - formate dehydrogenase-O major subunit, at 574,964 to 578,032
_0489
PP_0490: PP_0490 - formate dehydrogenase-O, beta subunit, at 578,032 to 578,982
_0490
PP_0491: PP_0491 - formate dehydrogenase-O, gamma subunit, at 578,979 to 579,635
_0491
PP_0492: PP_0492 - formate dehydrogenase formation protein, at 579,610 to 580,566
_0492
Position (kb) 578
579
580 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 578.124 kb on + strand at 578.212 kb on + strand, within PP_0490 at 578.212 kb on + strand, within PP_0490 at 578.213 kb on - strand, within PP_0490 at 578.213 kb on - strand, within PP_0490 at 578.466 kb on + strand, within PP_0490 at 578.466 kb on + strand, within PP_0490 at 578.491 kb on + strand, within PP_0490 at 578.491 kb on + strand at 578.492 kb on - strand, within PP_0490 at 578.492 kb on - strand, within PP_0490 at 578.642 kb on - strand, within PP_0490 at 578.696 kb on - strand, within PP_0490 at 578.696 kb on - strand, within PP_0490 at 578.728 kb on + strand, within PP_0490 at 578.728 kb on + strand, within PP_0490 at 578.845 kb on + strand, within PP_0490 at 578.845 kb on + strand, within PP_0490 at 578.846 kb on - strand, within PP_0490 at 578.846 kb on - strand, within PP_0490 at 578.938 kb on + strand at 578.938 kb on + strand at 578.938 kb on + strand at 578.938 kb on + strand at 578.938 kb on + strand at 578.938 kb on + strand at 578.939 kb on - strand at 578.939 kb on - strand at 579.006 kb on + strand at 579.007 kb on - strand at 579.023 kb on + strand at 579.023 kb on + strand at 579.024 kb on - strand at 579.024 kb on - strand at 579.196 kb on + strand, within PP_0491 at 579.196 kb on + strand, within PP_0491 at 579.196 kb on + strand, within PP_0491 at 579.197 kb on - strand, within PP_0491 at 579.197 kb on - strand, within PP_0491 at 579.303 kb on + strand, within PP_0491 at 579.303 kb on + strand, within PP_0491 at 579.304 kb on - strand, within PP_0491 at 579.304 kb on - strand, within PP_0491 at 579.304 kb on - strand, within PP_0491 at 579.304 kb on - strand, within PP_0491 at 579.391 kb on - strand, within PP_0491 at 579.391 kb on - strand, within PP_0491 at 579.489 kb on + strand, within PP_0491 at 579.489 kb on + strand, within PP_0491 at 579.490 kb on - strand, within PP_0491 at 579.490 kb on - strand, within PP_0491 at 579.650 kb on + strand at 579.650 kb on + strand at 579.651 kb on - strand at 579.651 kb on - strand at 579.779 kb on - strand, within PP_0492 at 579.779 kb on - strand, within PP_0492 at 579.801 kb on - strand, within PP_0492 at 579.827 kb on + strand, within PP_0492 at 579.956 kb on + strand, within PP_0492 at 579.957 kb on - strand, within PP_0492 at 580.010 kb on + strand, within PP_0492 at 580.010 kb on + strand, within PP_0492 at 580.011 kb on - strand, within PP_0492 at 580.011 kb on - strand, within PP_0492 at 580.069 kb on + strand, within PP_0492 at 580.069 kb on + strand, within PP_0492 at 580.258 kb on + strand, within PP_0492 at 580.315 kb on + strand, within PP_0492 at 580.315 kb on + strand, within PP_0492 at 580.316 kb on - strand, within PP_0492 at 580.435 kb on + strand, within PP_0492 at 580.435 kb on + strand, within PP_0492 at 580.436 kb on - strand, within PP_0492 at 580.436 kb on - strand, within PP_0492 at 580.499 kb on + strand at 580.499 kb on + strand at 580.499 kb on + strand at 580.499 kb on + strand at 580.499 kb on + strand at 580.499 kb on + strand at 580.499 kb on + strand at 580.499 kb on + strand at 580.499 kb on + strand at 580.500 kb on - strand at 580.500 kb on - strand at 580.500 kb on - strand at 580.500 kb on - strand at 580.500 kb on - strand at 580.572 kb on + strand at 580.617 kb on + strand at 580.617 kb on + strand at 580.618 kb on - strand at 580.623 kb on + strand at 580.624 kb on - strand at 580.624 kb on - strand at 580.624 kb on - strand at 580.624 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 578,124 + +0.6 578,212 + PP_0490 0.19 +2.1 578,212 + PP_0490 0.19 -1.3 578,213 - PP_0490 0.19 +0.6 578,213 - PP_0490 0.19 -0.0 578,466 + PP_0490 0.46 +1.3 578,466 + PP_0490 0.46 +1.7 578,491 + PP_0490 0.48 -1.5 578,491 + +0.3 578,492 - PP_0490 0.48 -0.4 578,492 - PP_0490 0.48 +1.4 578,642 - PP_0490 0.64 +0.1 578,696 - PP_0490 0.70 +0.4 578,696 - PP_0490 0.70 +1.6 578,728 + PP_0490 0.73 -1.7 578,728 + PP_0490 0.73 +0.7 578,845 + PP_0490 0.85 -1.7 578,845 + PP_0490 0.85 +1.3 578,846 - PP_0490 0.86 -2.1 578,846 - PP_0490 0.86 +1.5 578,938 + +0.0 578,938 + +1.5 578,938 + -2.6 578,938 + -0.5 578,938 + +0.3 578,938 + +0.2 578,939 - +1.9 578,939 - +1.7 579,006 + -1.7 579,007 - +0.2 579,023 + -1.1 579,023 + -1.6 579,024 - +1.8 579,024 - -0.1 579,196 + PP_0491 0.33 +1.0 579,196 + PP_0491 0.33 +0.8 579,196 + PP_0491 0.33 +1.3 579,197 - PP_0491 0.33 +1.1 579,197 - PP_0491 0.33 +0.8 579,303 + PP_0491 0.49 -0.3 579,303 + PP_0491 0.49 +0.3 579,304 - PP_0491 0.49 -1.0 579,304 - PP_0491 0.49 -0.2 579,304 - PP_0491 0.49 +0.3 579,304 - PP_0491 0.49 +1.2 579,391 - PP_0491 0.63 +2.4 579,391 - PP_0491 0.63 +1.4 579,489 + PP_0491 0.78 -0.1 579,489 + PP_0491 0.78 +1.3 579,490 - PP_0491 0.78 -1.3 579,490 - PP_0491 0.78 +1.8 579,650 + +0.3 579,650 + -0.8 579,651 - +0.8 579,651 - -0.7 579,779 - PP_0492 0.18 +1.8 579,779 - PP_0492 0.18 +1.3 579,801 - PP_0492 0.20 +1.3 579,827 + PP_0492 0.23 -2.1 579,956 + PP_0492 0.36 -2.1 579,957 - PP_0492 0.36 +0.1 580,010 + PP_0492 0.42 -2.3 580,010 + PP_0492 0.42 +0.5 580,011 - PP_0492 0.42 +0.3 580,011 - PP_0492 0.42 +1.7 580,069 + PP_0492 0.48 +0.3 580,069 + PP_0492 0.48 +1.9 580,258 + PP_0492 0.68 +0.2 580,315 + PP_0492 0.74 -0.6 580,315 + PP_0492 0.74 +0.4 580,316 - PP_0492 0.74 -0.3 580,435 + PP_0492 0.86 -3.0 580,435 + PP_0492 0.86 +1.7 580,436 - PP_0492 0.86 +0.7 580,436 - PP_0492 0.86 -0.0 580,499 + +0.8 580,499 + -0.9 580,499 + +2.3 580,499 + -0.7 580,499 + +0.1 580,499 + +0.6 580,499 + +1.0 580,499 + +1.2 580,499 + +1.8 580,500 - +1.8 580,500 - -0.2 580,500 - +2.0 580,500 - +0.0 580,500 - +0.5 580,572 + +0.1 580,617 + -0.7 580,617 + +1.4 580,618 - +1.3 580,623 + -0.8 580,624 - +0.0 580,624 - +2.5 580,624 - -0.7 580,624 - -0.1
Or see this region's nucleotide sequence