Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0484 and PP_0485 are separated by 9 nucleotides PP_0485 and PP_0486 are separated by 90 nucleotides PP_0486 and PP_0487 are separated by 146 nucleotides PP_0487 and PP_0488 are separated by 21 nucleotides
PP_0484: PP_0484 - transporter of an unknown substrate, at 569,625 to 571,019
_0484
PP_0485: PP_0485 - Single-stranded DNA-binding protein, at 571,029 to 571,574
_0485
PP_0486: PP_0486 - Transcriptional regulator, GntR family, at 571,665 to 573,089
_0486
PP_0487: PP_0487 - conserved membrane protein of unknown function, at 573,236 to 574,033
_0487
PP_0488: PP_0488 - putative NADP-dependent dehydrogenase HI_1430, at 574,055 to 574,816
_0488
Position (kb) 571
572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 570.773 kb on + strand, within PP_0484 at 570.813 kb on + strand, within PP_0484 at 570.813 kb on + strand, within PP_0484 at 570.813 kb on + strand, within PP_0484 at 570.936 kb on + strand at 570.936 kb on + strand at 570.938 kb on + strand at 571.669 kb on + strand at 571.890 kb on - strand, within PP_0486 at 571.890 kb on - strand, within PP_0486 at 571.890 kb on - strand, within PP_0486 at 571.921 kb on + strand, within PP_0486 at 571.922 kb on - strand, within PP_0486 at 571.979 kb on + strand, within PP_0486 at 572.068 kb on - strand, within PP_0486 at 572.068 kb on - strand, within PP_0486 at 572.080 kb on - strand, within PP_0486 at 572.107 kb on + strand, within PP_0486 at 572.161 kb on + strand, within PP_0486 at 572.161 kb on + strand, within PP_0486 at 572.161 kb on + strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.163 kb on + strand, within PP_0486 at 572.163 kb on + strand, within PP_0486 at 572.163 kb on + strand, within PP_0486 at 572.164 kb on - strand, within PP_0486 at 572.164 kb on - strand, within PP_0486 at 572.182 kb on + strand, within PP_0486 at 572.182 kb on + strand, within PP_0486 at 572.200 kb on + strand, within PP_0486 at 572.200 kb on + strand, within PP_0486 at 572.227 kb on + strand, within PP_0486 at 572.227 kb on + strand, within PP_0486 at 572.231 kb on + strand, within PP_0486 at 572.231 kb on + strand, within PP_0486 at 572.231 kb on + strand, within PP_0486 at 572.232 kb on - strand, within PP_0486 at 572.232 kb on - strand, within PP_0486 at 572.232 kb on - strand, within PP_0486 at 572.232 kb on - strand, within PP_0486 at 572.454 kb on + strand, within PP_0486 at 572.455 kb on - strand, within PP_0486 at 572.455 kb on - strand, within PP_0486 at 572.455 kb on - strand, within PP_0486 at 572.556 kb on + strand, within PP_0486 at 572.556 kb on + strand, within PP_0486 at 572.556 kb on + strand, within PP_0486 at 572.557 kb on - strand, within PP_0486 at 572.559 kb on + strand, within PP_0486 at 572.559 kb on + strand, within PP_0486 at 572.560 kb on - strand, within PP_0486 at 572.560 kb on - strand, within PP_0486 at 572.595 kb on + strand, within PP_0486 at 572.647 kb on + strand, within PP_0486 at 572.648 kb on - strand, within PP_0486 at 572.648 kb on - strand, within PP_0486 at 572.800 kb on - strand, within PP_0486 at 572.878 kb on + strand, within PP_0486 at 572.905 kb on - strand, within PP_0486 at 573.031 kb on + strand at 573.031 kb on + strand at 573.032 kb on - strand at 573.084 kb on + strand at 573.085 kb on - strand at 573.107 kb on + strand at 573.108 kb on - strand at 573.108 kb on - strand at 573.108 kb on - strand at 573.108 kb on - strand at 573.116 kb on + strand at 573.117 kb on - strand at 573.140 kb on + strand at 573.145 kb on + strand at 573.173 kb on + strand at 573.223 kb on - strand at 573.223 kb on - strand at 573.223 kb on - strand at 573.248 kb on - strand at 573.267 kb on - strand at 573.267 kb on - strand at 573.267 kb on - strand at 573.300 kb on + strand at 573.300 kb on + strand at 573.301 kb on - strand at 573.301 kb on - strand at 573.301 kb on - strand at 573.495 kb on + strand, within PP_0487 at 573.495 kb on + strand, within PP_0487 at 573.496 kb on - strand, within PP_0487 at 573.526 kb on - strand, within PP_0487 at 573.533 kb on + strand, within PP_0487 at 573.534 kb on - strand, within PP_0487 at 573.610 kb on + strand, within PP_0487 at 573.716 kb on + strand, within PP_0487 at 573.716 kb on + strand, within PP_0487 at 573.717 kb on - strand, within PP_0487 at 573.717 kb on - strand, within PP_0487 at 573.717 kb on - strand, within PP_0487 at 573.717 kb on - strand, within PP_0487 at 573.770 kb on + strand, within PP_0487 at 573.770 kb on + strand, within PP_0487 at 573.878 kb on + strand, within PP_0487 at 573.878 kb on + strand, within PP_0487 at 573.878 kb on + strand, within PP_0487 at 573.879 kb on - strand, within PP_0487 at 574.043 kb on - strand at 574.043 kb on - strand at 574.043 kb on - strand at 574.071 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 570,773 + PP_0484 0.82 +1.1 570,813 + PP_0484 0.85 -2.0 570,813 + PP_0484 0.85 +0.4 570,813 + PP_0484 0.85 +1.3 570,936 + +0.5 570,936 + +2.3 570,938 + -0.3 571,669 + -0.7 571,890 - PP_0486 0.16 -1.7 571,890 - PP_0486 0.16 +1.3 571,890 - PP_0486 0.16 +1.8 571,921 + PP_0486 0.18 -0.3 571,922 - PP_0486 0.18 +0.1 571,979 + PP_0486 0.22 -1.4 572,068 - PP_0486 0.28 +0.9 572,068 - PP_0486 0.28 -0.6 572,080 - PP_0486 0.29 -2.7 572,107 + PP_0486 0.31 -0.3 572,161 + PP_0486 0.35 +0.4 572,161 + PP_0486 0.35 +2.3 572,161 + PP_0486 0.35 -0.3 572,162 - PP_0486 0.35 +2.3 572,162 - PP_0486 0.35 -0.2 572,162 - PP_0486 0.35 +1.4 572,162 - PP_0486 0.35 +1.1 572,162 - PP_0486 0.35 +0.3 572,162 - PP_0486 0.35 -0.4 572,163 + PP_0486 0.35 +1.4 572,163 + PP_0486 0.35 +1.0 572,163 + PP_0486 0.35 +1.9 572,164 - PP_0486 0.35 -2.6 572,164 - PP_0486 0.35 +2.2 572,182 + PP_0486 0.36 +1.0 572,182 + PP_0486 0.36 +0.8 572,200 + PP_0486 0.38 +0.7 572,200 + PP_0486 0.38 -0.8 572,227 + PP_0486 0.39 -1.7 572,227 + PP_0486 0.39 +0.7 572,231 + PP_0486 0.40 +0.8 572,231 + PP_0486 0.40 +0.3 572,231 + PP_0486 0.40 +1.5 572,232 - PP_0486 0.40 +1.9 572,232 - PP_0486 0.40 -0.0 572,232 - PP_0486 0.40 -0.9 572,232 - PP_0486 0.40 +1.5 572,454 + PP_0486 0.55 +0.4 572,455 - PP_0486 0.55 +1.1 572,455 - PP_0486 0.55 -0.1 572,455 - PP_0486 0.55 +1.3 572,556 + PP_0486 0.63 -1.0 572,556 + PP_0486 0.63 -0.8 572,556 + PP_0486 0.63 +0.2 572,557 - PP_0486 0.63 -0.9 572,559 + PP_0486 0.63 +1.4 572,559 + PP_0486 0.63 -0.2 572,560 - PP_0486 0.63 -1.5 572,560 - PP_0486 0.63 -1.3 572,595 + PP_0486 0.65 +1.2 572,647 + PP_0486 0.69 -3.1 572,648 - PP_0486 0.69 -2.6 572,648 - PP_0486 0.69 +0.5 572,800 - PP_0486 0.80 -0.6 572,878 + PP_0486 0.85 -1.5 572,905 - PP_0486 0.87 +0.6 573,031 + +1.4 573,031 + -1.2 573,032 - +0.1 573,084 + +2.7 573,085 - +0.1 573,107 + +0.6 573,108 - +1.2 573,108 - +0.8 573,108 - -0.2 573,108 - +0.3 573,116 + +2.1 573,117 - +1.8 573,140 + +1.3 573,145 + -0.0 573,173 + -2.9 573,223 - -1.9 573,223 - -1.0 573,223 - +0.8 573,248 - +0.8 573,267 - +0.0 573,267 - -3.2 573,267 - +2.2 573,300 + -0.3 573,300 + +1.3 573,301 - -0.7 573,301 - +0.8 573,301 - +1.0 573,495 + PP_0487 0.32 -1.3 573,495 + PP_0487 0.32 -1.3 573,496 - PP_0487 0.33 -1.0 573,526 - PP_0487 0.36 +0.1 573,533 + PP_0487 0.37 -1.5 573,534 - PP_0487 0.37 +1.1 573,610 + PP_0487 0.47 -0.8 573,716 + PP_0487 0.60 -0.2 573,716 + PP_0487 0.60 +0.0 573,717 - PP_0487 0.60 +1.0 573,717 - PP_0487 0.60 +0.2 573,717 - PP_0487 0.60 +0.7 573,717 - PP_0487 0.60 +1.5 573,770 + PP_0487 0.67 -1.2 573,770 + PP_0487 0.67 -0.7 573,878 + PP_0487 0.80 -1.1 573,878 + PP_0487 0.80 +0.8 573,878 + PP_0487 0.80 +0.3 573,879 - PP_0487 0.81 +1.4 574,043 - -1.0 574,043 - +2.3 574,043 - +1.4 574,071 + -0.0
Or see this region's nucleotide sequence