Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0477 and PP_0478 are separated by 15 nucleotides PP_0478 and PP_0479 are separated by 22 nucleotides PP_0479 and PP_0480 are separated by 42 nucleotides PP_0480 and PP_0481 are separated by 172 nucleotides
PP_0477: PP_0477 - 30S ribosomal protein S11, at 561,870 to 562,259
_0477
PP_0478: PP_0478 - 30S ribosomal protein S4, at 562,275 to 562,895
_0478
PP_0479: PP_0479 - DNA-directed RNA polymerase subunit alpha, at 562,918 to 563,919
_0479
PP_0480: PP_0480 - 50S ribosomal protein L17, at 563,962 to 564,348
_0480
PP_0481: PP_0481 - Catalase, at 564,521 to 565,960
_0481
Position (kb) 562
563
564 Strain fitness (log2 ratio) -2
-1
0
1
2 at 564.469 kb on + strand at 564.469 kb on + strand at 564.478 kb on + strand at 564.478 kb on + strand at 564.559 kb on - strand at 564.699 kb on - strand, within PP_0481 at 564.699 kb on - strand, within PP_0481 at 564.703 kb on + strand, within PP_0481 at 564.703 kb on + strand, within PP_0481 at 564.704 kb on - strand, within PP_0481 at 564.724 kb on + strand, within PP_0481 at 564.736 kb on + strand, within PP_0481 at 564.736 kb on + strand, within PP_0481 at 564.787 kb on - strand, within PP_0481 at 564.787 kb on - strand, within PP_0481 at 564.864 kb on - strand, within PP_0481 at 564.864 kb on - strand, within PP_0481 at 564.864 kb on - strand, within PP_0481 at 564.910 kb on - strand, within PP_0481 at 564.910 kb on - strand, within PP_0481
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 564,469 + -1.9 564,469 + +1.2 564,478 + +0.7 564,478 + +0.2 564,559 - +0.6 564,699 - PP_0481 0.12 -2.5 564,699 - PP_0481 0.12 -0.4 564,703 + PP_0481 0.13 +1.0 564,703 + PP_0481 0.13 -0.8 564,704 - PP_0481 0.13 -0.6 564,724 + PP_0481 0.14 -1.3 564,736 + PP_0481 0.15 -0.5 564,736 + PP_0481 0.15 +1.3 564,787 - PP_0481 0.18 -0.3 564,787 - PP_0481 0.18 +0.7 564,864 - PP_0481 0.24 -1.3 564,864 - PP_0481 0.24 +1.5 564,864 - PP_0481 0.24 +1.1 564,910 - PP_0481 0.27 +0.3 564,910 - PP_0481 0.27 +2.7
Or see this region's nucleotide sequence