Strain Fitness in Pseudomonas putida KT2440 around PP_0359

Experiment: P. putida PUT 7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0358 and PP_0359 are separated by 64 nucleotidesPP_0359 and PP_0360 are separated by 65 nucleotidesPP_0360 and PP_0361 are separated by 49 nucleotides PP_0358: PP_0358 - conserved membrane protein of unknown function, at 436,400 to 437,287 _0358 PP_0359: PP_0359 - serine/threonine protein kinase, at 437,352 to 438,359 _0359 PP_0360: PP_0360 - Molybdate transport regulator, at 438,425 to 439,189 _0360 PP_0361: PP_0361 - putative Competence protein ComF, at 439,239 to 439,970 _0361 Position (kb) 437 438 439Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 436.367 kb on + strandat 436.368 kb on - strandat 436.515 kb on - strand, within PP_0358at 436.573 kb on - strand, within PP_0358at 436.604 kb on + strand, within PP_0358at 436.663 kb on + strand, within PP_0358at 436.664 kb on - strand, within PP_0358at 436.664 kb on - strand, within PP_0358at 436.665 kb on + strand, within PP_0358at 436.666 kb on - strand, within PP_0358at 436.666 kb on - strand, within PP_0358at 436.703 kb on + strand, within PP_0358at 436.784 kb on - strand, within PP_0358at 436.797 kb on + strand, within PP_0358at 436.797 kb on + strand, within PP_0358at 436.798 kb on - strand, within PP_0358at 436.830 kb on - strand, within PP_0358at 436.946 kb on + strand, within PP_0358at 436.946 kb on + strand, within PP_0358at 436.946 kb on + strand, within PP_0358at 436.946 kb on + strand, within PP_0358at 436.947 kb on - strand, within PP_0358at 436.947 kb on - strand, within PP_0358at 436.947 kb on - strand, within PP_0358at 436.968 kb on + strand, within PP_0358at 436.968 kb on + strand, within PP_0358at 436.968 kb on + strand, within PP_0358at 436.969 kb on - strand, within PP_0358at 436.969 kb on - strand, within PP_0358at 436.969 kb on - strand, within PP_0358at 436.971 kb on + strand, within PP_0358at 436.971 kb on + strand, within PP_0358at 436.972 kb on - strand, within PP_0358at 436.972 kb on - strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.019 kb on + strand, within PP_0358at 437.020 kb on - strand, within PP_0358at 437.020 kb on - strand, within PP_0358at 437.126 kb on + strand, within PP_0358at 437.127 kb on - strand, within PP_0358at 437.211 kb on + strandat 437.212 kb on - strandat 437.238 kb on + strandat 437.238 kb on + strandat 437.239 kb on - strandat 437.239 kb on - strandat 437.255 kb on + strandat 437.255 kb on + strandat 437.255 kb on + strandat 437.255 kb on + strandat 437.255 kb on + strandat 437.256 kb on - strandat 437.256 kb on - strandat 437.256 kb on - strandat 437.256 kb on - strandat 437.260 kb on - strandat 437.315 kb on - strandat 437.315 kb on - strandat 437.331 kb on + strandat 437.353 kb on + strandat 437.498 kb on + strand, within PP_0359at 437.498 kb on + strand, within PP_0359at 437.498 kb on + strand, within PP_0359at 437.498 kb on + strand, within PP_0359at 437.498 kb on + strand, within PP_0359at 437.498 kb on + strand, within PP_0359at 437.499 kb on - strand, within PP_0359at 437.499 kb on - strand, within PP_0359at 437.500 kb on + strand, within PP_0359at 437.501 kb on - strand, within PP_0359at 437.501 kb on - strand, within PP_0359at 437.501 kb on - strand, within PP_0359at 437.501 kb on - strand, within PP_0359at 437.576 kb on - strand, within PP_0359at 437.692 kb on + strand, within PP_0359at 437.692 kb on + strand, within PP_0359at 437.693 kb on - strand, within PP_0359at 437.693 kb on - strand, within PP_0359at 437.693 kb on - strand, within PP_0359at 437.770 kb on + strand, within PP_0359at 437.770 kb on + strand, within PP_0359at 437.770 kb on + strand, within PP_0359at 437.771 kb on - strand, within PP_0359at 437.771 kb on - strand, within PP_0359at 437.771 kb on - strand, within PP_0359at 437.846 kb on + strand, within PP_0359at 437.952 kb on + strand, within PP_0359at 437.952 kb on + strand, within PP_0359at 437.952 kb on + strand, within PP_0359at 438.212 kb on - strand, within PP_0359at 438.226 kb on + strand, within PP_0359at 438.227 kb on - strand, within PP_0359at 438.227 kb on - strand, within PP_0359at 438.227 kb on - strand, within PP_0359at 438.343 kb on - strandat 438.362 kb on + strandat 438.370 kb on + strandat 438.370 kb on + strandat 438.427 kb on - strandat 438.427 kb on - strandat 438.450 kb on + strandat 438.450 kb on + strandat 438.451 kb on - strandat 438.451 kb on - strandat 438.622 kb on + strand, within PP_0360at 438.623 kb on - strand, within PP_0360at 438.623 kb on - strand, within PP_0360at 438.623 kb on - strand, within PP_0360at 438.623 kb on - strand, within PP_0360at 438.656 kb on + strand, within PP_0360at 438.657 kb on - strand, within PP_0360at 438.677 kb on + strand, within PP_0360at 438.678 kb on - strand, within PP_0360at 438.790 kb on - strand, within PP_0360at 438.905 kb on + strand, within PP_0360at 438.936 kb on + strand, within PP_0360at 438.936 kb on + strand, within PP_0360at 438.937 kb on - strand, within PP_0360at 439.069 kb on - strand, within PP_0360at 439.069 kb on - strand, within PP_0360at 439.076 kb on - strand, within PP_0360at 439.120 kb on + strandat 439.120 kb on + strandat 439.121 kb on - strandat 439.121 kb on - strandat 439.121 kb on - strandat 439.193 kb on + strandat 439.193 kb on + strandat 439.193 kb on + strandat 439.201 kb on - strandat 439.201 kb on - strandat 439.202 kb on + strandat 439.202 kb on + strandat 439.202 kb on + strandat 439.202 kb on + strandat 439.202 kb on + strandat 439.202 kb on + strandat 439.203 kb on - strandat 439.203 kb on - strandat 439.216 kb on - strandat 439.216 kb on - strandat 439.216 kb on - strandat 439.242 kb on + strandat 439.242 kb on + strandat 439.242 kb on + strandat 439.242 kb on + strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.243 kb on - strandat 439.246 kb on + strandat 439.246 kb on + strandat 439.262 kb on + strandat 439.262 kb on + strandat 439.263 kb on - strandat 439.276 kb on + strandat 439.276 kb on + strandat 439.276 kb on + strandat 439.276 kb on + strandat 439.276 kb on + strandat 439.277 kb on - strandat 439.277 kb on - strandat 439.277 kb on - strandat 439.277 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1
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436,367 + -0.7
436,368 - +0.9
436,515 - PP_0358 0.13 +0.3
436,573 - PP_0358 0.19 -0.3
436,604 + PP_0358 0.23 +0.8
436,663 + PP_0358 0.30 -0.9
436,664 - PP_0358 0.30 -1.2
436,664 - PP_0358 0.30 -0.4
436,665 + PP_0358 0.30 -0.2
436,666 - PP_0358 0.30 +0.1
436,666 - PP_0358 0.30 -0.4
436,703 + PP_0358 0.34 -3.2
436,784 - PP_0358 0.43 -2.5
436,797 + PP_0358 0.45 +0.2
436,797 + PP_0358 0.45 -1.5
436,798 - PP_0358 0.45 +0.0
436,830 - PP_0358 0.48 -3.1
436,946 + PP_0358 0.61 -0.3
436,946 + PP_0358 0.61 +2.4
436,946 + PP_0358 0.61 +0.9
436,946 + PP_0358 0.61 -0.8
436,947 - PP_0358 0.62 -1.3
436,947 - PP_0358 0.62 -1.9
436,947 - PP_0358 0.62 +0.7
436,968 + PP_0358 0.64 -0.7
436,968 + PP_0358 0.64 -1.5
436,968 + PP_0358 0.64 -0.8
436,969 - PP_0358 0.64 -2.0
436,969 - PP_0358 0.64 -0.7
436,969 - PP_0358 0.64 -3.3
436,971 + PP_0358 0.64 +1.1
436,971 + PP_0358 0.64 -0.7
436,972 - PP_0358 0.64 +1.0
436,972 - PP_0358 0.64 -1.1
437,019 + PP_0358 0.70 +1.2
437,019 + PP_0358 0.70 +1.3
437,019 + PP_0358 0.70 -3.3
437,019 + PP_0358 0.70 -0.2
437,019 + PP_0358 0.70 -0.1
437,019 + PP_0358 0.70 +0.3
437,019 + PP_0358 0.70 -0.2
437,020 - PP_0358 0.70 -0.1
437,020 - PP_0358 0.70 +1.1
437,126 + PP_0358 0.82 +0.5
437,127 - PP_0358 0.82 +1.1
437,211 + -3.0
437,212 - -3.2
437,238 + -0.8
437,238 + -0.1
437,239 - +0.4
437,239 - -1.2
437,255 + -0.9
437,255 + +0.7
437,255 + -0.4
437,255 + -1.3
437,255 + -0.7
437,256 - -1.2
437,256 - -2.0
437,256 - -1.2
437,256 - -0.5
437,260 - +2.4
437,315 - -0.2
437,315 - +0.4
437,331 + +0.1
437,353 + -2.8
437,498 + PP_0359 0.14 -3.5
437,498 + PP_0359 0.14 -2.8
437,498 + PP_0359 0.14 -3.3
437,498 + PP_0359 0.14 -2.4
437,498 + PP_0359 0.14 -2.1
437,498 + PP_0359 0.14 +1.3
437,499 - PP_0359 0.15 +0.7
437,499 - PP_0359 0.15 -2.6
437,500 + PP_0359 0.15 -0.3
437,501 - PP_0359 0.15 -2.2
437,501 - PP_0359 0.15 +0.6
437,501 - PP_0359 0.15 +1.2
437,501 - PP_0359 0.15 +0.3
437,576 - PP_0359 0.22 +0.2
437,692 + PP_0359 0.34 -4.0
437,692 + PP_0359 0.34 -0.6
437,693 - PP_0359 0.34 +1.0
437,693 - PP_0359 0.34 +1.2
437,693 - PP_0359 0.34 -1.6
437,770 + PP_0359 0.41 -4.2
437,770 + PP_0359 0.41 -2.5
437,770 + PP_0359 0.41 -1.3
437,771 - PP_0359 0.42 -2.4
437,771 - PP_0359 0.42 +0.6
437,771 - PP_0359 0.42 +0.2
437,846 + PP_0359 0.49 +0.3
437,952 + PP_0359 0.60 -1.5
437,952 + PP_0359 0.60 -3.5
437,952 + PP_0359 0.60 -0.9
438,212 - PP_0359 0.85 -0.7
438,226 + PP_0359 0.87 +1.4
438,227 - PP_0359 0.87 -0.6
438,227 - PP_0359 0.87 +0.5
438,227 - PP_0359 0.87 +0.8
438,343 - +0.4
438,362 + -1.4
438,370 + +0.6
438,370 + -3.5
438,427 - -0.7
438,427 - +0.6
438,450 + -1.3
438,450 + -2.8
438,451 - +0.3
438,451 - +0.6
438,622 + PP_0360 0.26 +0.9
438,623 - PP_0360 0.26 +0.4
438,623 - PP_0360 0.26 -1.5
438,623 - PP_0360 0.26 -1.1
438,623 - PP_0360 0.26 -1.8
438,656 + PP_0360 0.30 -2.9
438,657 - PP_0360 0.30 +0.2
438,677 + PP_0360 0.33 -0.5
438,678 - PP_0360 0.33 +1.0
438,790 - PP_0360 0.48 +0.8
438,905 + PP_0360 0.63 -1.9
438,936 + PP_0360 0.67 -0.6
438,936 + PP_0360 0.67 -3.0
438,937 - PP_0360 0.67 -0.1
439,069 - PP_0360 0.84 -0.9
439,069 - PP_0360 0.84 +0.7
439,076 - PP_0360 0.85 +0.2
439,120 + +1.4
439,120 + -0.3
439,121 - -0.2
439,121 - +1.2
439,121 - -2.8
439,193 + -2.4
439,193 + -2.7
439,193 + +0.2
439,201 - +1.2
439,201 - +0.7
439,202 + -0.0
439,202 + -1.4
439,202 + -0.9
439,202 + -1.3
439,202 + -4.0
439,202 + +1.4
439,203 - -1.0
439,203 - -3.5
439,216 - +0.1
439,216 - -0.4
439,216 - +0.2
439,242 + -1.3
439,242 + -1.8
439,242 + +0.3
439,242 + +0.8
439,243 - -1.9
439,243 - +0.5
439,243 - +0.5
439,243 - -1.9
439,243 - -1.3
439,243 - -1.9
439,243 - -2.8
439,243 - -3.3
439,243 - +1.4
439,243 - +0.6
439,243 - -2.4
439,246 + -3.6
439,246 + +0.4
439,262 + +1.2
439,262 + -0.2
439,263 - -0.8
439,276 + +0.8
439,276 + +1.1
439,276 + +2.4
439,276 + -1.9
439,276 + -0.2
439,277 - +0.8
439,277 - +1.4
439,277 - -0.4
439,277 - -2.6

Or see this region's nucleotide sequence