Strain Fitness in Pseudomonas putida KT2440 around PP_0269

Experiment: P. putida PUT 7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0268 and PP_0269 are separated by 30 nucleotidesPP_0269 and PP_0270 are separated by 149 nucleotides PP_0268: PP_0268 - outer-membrane porin D, at 324,715 to 326,034 _0268 PP_0269: PP_0269 - putative Glutamate synthase, large subunit, at 326,065 to 327,732 _0269 PP_0270: PP_0270 - Sensor histidine kinase, at 327,882 to 329,249 _0270 Position (kb) 326 327 328Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 325.135 kb on + strand, within PP_0268at 325.136 kb on - strand, within PP_0268at 325.328 kb on + strand, within PP_0268at 325.329 kb on - strand, within PP_0268at 325.329 kb on - strand, within PP_0268at 325.329 kb on - strand, within PP_0268at 325.329 kb on - strand, within PP_0268at 325.329 kb on - strand, within PP_0268at 325.340 kb on - strand, within PP_0268at 325.408 kb on + strand, within PP_0268at 325.409 kb on - strand, within PP_0268at 325.409 kb on - strand, within PP_0268at 325.423 kb on + strand, within PP_0268at 325.423 kb on + strand, within PP_0268at 325.423 kb on + strand, within PP_0268at 325.423 kb on + strand, within PP_0268at 325.423 kb on + strand, within PP_0268at 325.424 kb on - strand, within PP_0268at 325.424 kb on - strand, within PP_0268at 325.498 kb on + strand, within PP_0268at 325.498 kb on + strand, within PP_0268at 325.498 kb on + strand, within PP_0268at 325.498 kb on + strand, within PP_0268at 325.499 kb on - strand, within PP_0268at 325.499 kb on - strand, within PP_0268at 325.502 kb on + strand, within PP_0268at 325.558 kb on + strand, within PP_0268at 325.558 kb on + strand, within PP_0268at 325.559 kb on - strand, within PP_0268at 325.559 kb on - strand, within PP_0268at 325.559 kb on - strand, within PP_0268at 325.559 kb on - strand, within PP_0268at 325.559 kb on - strand, within PP_0268at 325.559 kb on - strand, within PP_0268at 325.565 kb on - strand, within PP_0268at 325.618 kb on + strand, within PP_0268at 325.619 kb on - strand, within PP_0268at 325.624 kb on + strand, within PP_0268at 325.624 kb on + strand, within PP_0268at 325.624 kb on + strand, within PP_0268at 325.624 kb on + strand, within PP_0268at 325.625 kb on - strand, within PP_0268at 325.625 kb on - strand, within PP_0268at 325.634 kb on - strand, within PP_0268at 325.676 kb on - strand, within PP_0268at 325.690 kb on + strand, within PP_0268at 325.691 kb on - strand, within PP_0268at 325.759 kb on + strand, within PP_0268at 325.760 kb on - strand, within PP_0268at 325.780 kb on + strand, within PP_0268at 325.781 kb on - strand, within PP_0268at 325.781 kb on - strand, within PP_0268at 325.781 kb on - strand, within PP_0268at 325.792 kb on + strand, within PP_0268at 325.792 kb on + strand, within PP_0268at 325.792 kb on + strand, within PP_0268at 325.792 kb on + strand, within PP_0268at 325.793 kb on - strand, within PP_0268at 325.932 kb on + strandat 325.932 kb on + strandat 325.932 kb on + strandat 325.932 kb on + strandat 325.932 kb on + strandat 325.932 kb on + strandat 325.933 kb on - strandat 325.975 kb on + strandat 326.048 kb on + strandat 326.049 kb on - strandat 326.066 kb on + strandat 326.067 kb on - strandat 326.122 kb on + strandat 326.123 kb on - strandat 326.174 kb on + strandat 326.203 kb on + strandat 326.204 kb on - strandat 326.472 kb on + strand, within PP_0269at 326.473 kb on - strand, within PP_0269at 326.533 kb on + strand, within PP_0269at 326.533 kb on + strand, within PP_0269at 327.089 kb on + strand, within PP_0269at 327.270 kb on - strand, within PP_0269at 327.431 kb on + strand, within PP_0269at 327.492 kb on - strand, within PP_0269at 327.534 kb on + strand, within PP_0269at 327.535 kb on - strand, within PP_0269at 327.694 kb on + strandat 327.695 kb on - strandat 327.763 kb on - strandat 327.763 kb on - strandat 327.767 kb on + strandat 327.767 kb on + strandat 327.797 kb on + strandat 327.815 kb on + strandat 327.815 kb on + strandat 327.849 kb on + strandat 327.849 kb on + strandat 327.849 kb on + strandat 327.849 kb on + strandat 327.849 kb on + strandat 327.850 kb on - strandat 327.850 kb on - strandat 327.850 kb on - strandat 327.850 kb on - strandat 327.897 kb on + strandat 327.897 kb on + strandat 327.897 kb on + strandat 327.898 kb on - strandat 327.898 kb on - strandat 327.898 kb on - strandat 327.898 kb on - strandat 327.898 kb on - strandat 327.936 kb on + strandat 327.937 kb on - strandat 327.937 kb on - strandat 328.150 kb on + strand, within PP_0270at 328.358 kb on + strandat 328.358 kb on + strand, within PP_0270at 328.358 kb on + strand, within PP_0270at 328.358 kb on + strand, within PP_0270at 328.358 kb on + strand, within PP_0270at 328.358 kb on + strand, within PP_0270at 328.358 kb on + strand, within PP_0270at 328.358 kb on + strand, within PP_0270at 328.359 kb on - strand, within PP_0270at 328.359 kb on - strand, within PP_0270at 328.359 kb on - strand, within PP_0270at 328.359 kb on - strand, within PP_0270at 328.483 kb on + strand, within PP_0270at 328.483 kb on + strand, within PP_0270at 328.484 kb on - strand, within PP_0270at 328.484 kb on - strand, within PP_0270at 328.699 kb on + strand, within PP_0270at 328.700 kb on - strand, within PP_0270at 328.700 kb on - strand, within PP_0270at 328.715 kb on - strand, within PP_0270

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1
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325,135 + PP_0268 0.32 +0.8
325,136 - PP_0268 0.32 -1.7
325,328 + PP_0268 0.46 -3.1
325,329 - PP_0268 0.47 -1.6
325,329 - PP_0268 0.47 -1.6
325,329 - PP_0268 0.47 -0.2
325,329 - PP_0268 0.47 +2.3
325,329 - PP_0268 0.47 +0.1
325,340 - PP_0268 0.47 +1.9
325,408 + PP_0268 0.53 -0.6
325,409 - PP_0268 0.53 -1.4
325,409 - PP_0268 0.53 -2.1
325,423 + PP_0268 0.54 -2.2
325,423 + PP_0268 0.54 +0.1
325,423 + PP_0268 0.54 +0.7
325,423 + PP_0268 0.54 +0.9
325,423 + PP_0268 0.54 -0.4
325,424 - PP_0268 0.54 +0.2
325,424 - PP_0268 0.54 -1.0
325,498 + PP_0268 0.59 -0.3
325,498 + PP_0268 0.59 -0.1
325,498 + PP_0268 0.59 +0.3
325,498 + PP_0268 0.59 -1.1
325,499 - PP_0268 0.59 +0.3
325,499 - PP_0268 0.59 +1.4
325,502 + PP_0268 0.60 -0.2
325,558 + PP_0268 0.64 -3.0
325,558 + PP_0268 0.64 +0.7
325,559 - PP_0268 0.64 +0.9
325,559 - PP_0268 0.64 -1.5
325,559 - PP_0268 0.64 +0.8
325,559 - PP_0268 0.64 +2.2
325,559 - PP_0268 0.64 +1.2
325,559 - PP_0268 0.64 -2.5
325,565 - PP_0268 0.64 -1.3
325,618 + PP_0268 0.68 +1.0
325,619 - PP_0268 0.68 +3.5
325,624 + PP_0268 0.69 -2.6
325,624 + PP_0268 0.69 +0.1
325,624 + PP_0268 0.69 +0.1
325,624 + PP_0268 0.69 +1.3
325,625 - PP_0268 0.69 -1.7
325,625 - PP_0268 0.69 -2.9
325,634 - PP_0268 0.70 +1.1
325,676 - PP_0268 0.73 +0.6
325,690 + PP_0268 0.74 -2.1
325,691 - PP_0268 0.74 +0.5
325,759 + PP_0268 0.79 -0.9
325,760 - PP_0268 0.79 +0.9
325,780 + PP_0268 0.81 +1.2
325,781 - PP_0268 0.81 +0.8
325,781 - PP_0268 0.81 -1.4
325,781 - PP_0268 0.81 +0.4
325,792 + PP_0268 0.82 +1.4
325,792 + PP_0268 0.82 -2.1
325,792 + PP_0268 0.82 +0.7
325,792 + PP_0268 0.82 -0.5
325,793 - PP_0268 0.82 -2.9
325,932 + +1.0
325,932 + -0.7
325,932 + -2.4
325,932 + -1.2
325,932 + +1.8
325,932 + +0.5
325,933 - +2.1
325,975 + -0.6
326,048 + +0.1
326,049 - +0.7
326,066 + -2.1
326,067 - +1.5
326,122 + +0.7
326,123 - -2.1
326,174 + +2.5
326,203 + -0.1
326,204 - -2.1
326,472 + PP_0269 0.24 +1.0
326,473 - PP_0269 0.24 +0.4
326,533 + PP_0269 0.28 -0.2
326,533 + PP_0269 0.28 +1.7
327,089 + PP_0269 0.61 -0.1
327,270 - PP_0269 0.72 -0.3
327,431 + PP_0269 0.82 -0.9
327,492 - PP_0269 0.86 +0.6
327,534 + PP_0269 0.88 +1.2
327,535 - PP_0269 0.88 +1.4
327,694 + -2.5
327,695 - -0.3
327,763 - +0.3
327,763 - +0.5
327,767 + -0.1
327,767 + -2.1
327,797 + +0.0
327,815 + +0.2
327,815 + +0.1
327,849 + -0.6
327,849 + -0.3
327,849 + +0.3
327,849 + +2.1
327,849 + -0.3
327,850 - +1.3
327,850 - -2.7
327,850 - +0.0
327,850 - -1.8
327,897 + +0.4
327,897 + -0.7
327,897 + -0.2
327,898 - +0.2
327,898 - -2.5
327,898 - +2.9
327,898 - +0.5
327,898 - +1.4
327,936 + -0.6
327,937 - +0.5
327,937 - -1.2
328,150 + PP_0270 0.20 +1.2
328,358 + +1.5
328,358 + PP_0270 0.35 -0.1
328,358 + PP_0270 0.35 -0.7
328,358 + PP_0270 0.35 +1.4
328,358 + PP_0270 0.35 +0.2
328,358 + PP_0270 0.35 +1.2
328,358 + PP_0270 0.35 +1.4
328,358 + PP_0270 0.35 +0.1
328,359 - PP_0270 0.35 -2.6
328,359 - PP_0270 0.35 -0.6
328,359 - PP_0270 0.35 -0.6
328,359 - PP_0270 0.35 -1.4
328,483 + PP_0270 0.44 -2.9
328,483 + PP_0270 0.44 -1.9
328,484 - PP_0270 0.44 -0.8
328,484 - PP_0270 0.44 -0.5
328,699 + PP_0270 0.60 +1.3
328,700 - PP_0270 0.60 -2.7
328,700 - PP_0270 0.60 -2.1
328,715 - PP_0270 0.61 +1.8

Or see this region's nucleotide sequence