Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0220 and PP_0221 are separated by 1 nucleotides PP_0221 and PP_0222 overlap by 8 nucleotides
PP_0220: PP_0220 - methionine import ATP-binding protein metN2, at 272,658 to 273,767
_0220
PP_0221: PP_0221 - methionine ABC transporter periplasmic-binding lipoprotein (metQ-like protein), at 273,769 to 274,569
_0221
PP_0222: PP_0222 - Monooxygenase, DszA family, at 274,562 to 275,947
_0222
Position (kb) 273
274
275 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 273.271 kb on + strand, within PP_0220 at 273.495 kb on + strand, within PP_0220 at 273.551 kb on + strand, within PP_0220 at 273.552 kb on - strand at 273.552 kb on - strand, within PP_0220 at 273.644 kb on - strand, within PP_0220 at 273.791 kb on + strand at 273.792 kb on - strand at 273.792 kb on - strand at 273.792 kb on - strand at 273.792 kb on - strand at 273.845 kb on + strand at 273.845 kb on + strand at 273.845 kb on + strand at 273.845 kb on + strand at 273.845 kb on + strand at 273.846 kb on - strand at 273.846 kb on - strand at 273.846 kb on - strand at 273.846 kb on - strand at 273.846 kb on - strand at 273.846 kb on - strand at 273.914 kb on + strand, within PP_0221 at 273.914 kb on + strand, within PP_0221 at 273.914 kb on + strand, within PP_0221 at 273.914 kb on + strand, within PP_0221 at 273.914 kb on + strand, within PP_0221 at 273.915 kb on - strand, within PP_0221 at 273.915 kb on - strand, within PP_0221 at 273.954 kb on + strand, within PP_0221 at 273.983 kb on + strand, within PP_0221 at 273.983 kb on + strand, within PP_0221 at 273.983 kb on + strand, within PP_0221 at 273.984 kb on - strand, within PP_0221 at 274.103 kb on + strand, within PP_0221 at 274.104 kb on - strand, within PP_0221 at 274.337 kb on + strand, within PP_0221 at 274.337 kb on + strand, within PP_0221 at 274.476 kb on + strand, within PP_0221 at 274.597 kb on + strand at 274.684 kb on - strand at 274.696 kb on - strand at 274.853 kb on + strand, within PP_0222 at 274.853 kb on + strand, within PP_0222 at 274.853 kb on + strand, within PP_0222 at 274.854 kb on - strand, within PP_0222 at 274.857 kb on + strand, within PP_0222 at 275.052 kb on + strand, within PP_0222 at 275.317 kb on - strand, within PP_0222 at 275.331 kb on + strand, within PP_0222 at 275.331 kb on + strand, within PP_0222 at 275.379 kb on + strand, within PP_0222 at 275.379 kb on + strand, within PP_0222 at 275.380 kb on - strand, within PP_0222 at 275.380 kb on - strand, within PP_0222 at 275.380 kb on - strand, within PP_0222 at 275.380 kb on - strand, within PP_0222 at 275.442 kb on + strand, within PP_0222 at 275.442 kb on + strand, within PP_0222 at 275.442 kb on + strand, within PP_0222 at 275.443 kb on - strand, within PP_0222 at 275.457 kb on + strand, within PP_0222
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 273,271 + PP_0220 0.55 -0.7 273,495 + PP_0220 0.75 +0.7 273,551 + PP_0220 0.80 +1.4 273,552 - +0.4 273,552 - PP_0220 0.81 -2.8 273,644 - PP_0220 0.89 -1.3 273,791 + -2.0 273,792 - -1.1 273,792 - -0.4 273,792 - -2.8 273,792 - -3.2 273,845 + -1.3 273,845 + -0.8 273,845 + -0.7 273,845 + -0.5 273,845 + +0.1 273,846 - -2.2 273,846 - -3.6 273,846 - +0.9 273,846 - -2.0 273,846 - +0.0 273,846 - -0.4 273,914 + PP_0221 0.18 -0.4 273,914 + PP_0221 0.18 -2.0 273,914 + PP_0221 0.18 -1.5 273,914 + PP_0221 0.18 +0.4 273,914 + PP_0221 0.18 +0.3 273,915 - PP_0221 0.18 +0.2 273,915 - PP_0221 0.18 -2.1 273,954 + PP_0221 0.23 +0.2 273,983 + PP_0221 0.27 -1.4 273,983 + PP_0221 0.27 -1.5 273,983 + PP_0221 0.27 -0.2 273,984 - PP_0221 0.27 -0.4 274,103 + PP_0221 0.42 +0.2 274,104 - PP_0221 0.42 -0.2 274,337 + PP_0221 0.71 -0.4 274,337 + PP_0221 0.71 -2.8 274,476 + PP_0221 0.88 -1.7 274,597 + -1.5 274,684 - -2.5 274,696 - -1.7 274,853 + PP_0222 0.21 -0.1 274,853 + PP_0222 0.21 -0.3 274,853 + PP_0222 0.21 -1.0 274,854 - PP_0222 0.21 -0.1 274,857 + PP_0222 0.21 +0.5 275,052 + PP_0222 0.35 -1.2 275,317 - PP_0222 0.54 -3.9 275,331 + PP_0222 0.55 -2.5 275,331 + PP_0222 0.55 +0.9 275,379 + PP_0222 0.59 -2.1 275,379 + PP_0222 0.59 -1.5 275,380 - PP_0222 0.59 -1.3 275,380 - PP_0222 0.59 -0.2 275,380 - PP_0222 0.59 +2.6 275,380 - PP_0222 0.59 -0.2 275,442 + PP_0222 0.63 +1.1 275,442 + PP_0222 0.63 -2.9 275,442 + PP_0222 0.63 -1.3 275,443 - PP_0222 0.64 +0.5 275,457 + PP_0222 0.65 -2.6
Or see this region's nucleotide sequence