Strain Fitness in Pseudomonas putida KT2440 around PP_0218

Experiment: P. putida PUT 7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0217 and PP_0218 are separated by 146 nucleotidesPP_0218 and PP_0219 are separated by 28 nucleotidesPP_0219 and PP_0220 overlap by 11 nucleotides PP_0217: PP_0217 - delta-9 fatty acid desaturase, at 268,769 to 269,953 _0217 PP_0218: PP_0218 - Sensory box protein, at 270,100 to 271,995 _0218 PP_0219: PP_0219 - L,D-methionine D-methionine ABC transporter - permease subunit, at 272,024 to 272,668 _0219 PP_0220: PP_0220 - methionine import ATP-binding protein metN2, at 272,658 to 273,767 _0220 Position (kb) 270 271 272Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 269.319 kb on + strand, within PP_0217at 269.375 kb on + strand, within PP_0217at 269.376 kb on - strand, within PP_0217at 269.486 kb on + strand, within PP_0217at 269.486 kb on + strand, within PP_0217at 269.486 kb on + strand, within PP_0217at 269.498 kb on + strand, within PP_0217at 269.498 kb on + strand, within PP_0217at 269.498 kb on + strand, within PP_0217at 269.498 kb on + strand, within PP_0217at 269.498 kb on + strand, within PP_0217at 269.499 kb on - strand, within PP_0217at 269.499 kb on - strand, within PP_0217at 269.499 kb on - strand, within PP_0217at 269.608 kb on - strand, within PP_0217at 269.608 kb on - strand, within PP_0217at 269.608 kb on - strand, within PP_0217at 269.608 kb on - strand, within PP_0217at 269.647 kb on - strand, within PP_0217at 269.689 kb on - strand, within PP_0217at 269.859 kb on + strandat 269.860 kb on - strandat 269.944 kb on + strandat 269.944 kb on + strandat 269.945 kb on - strandat 269.946 kb on + strandat 269.946 kb on + strandat 269.946 kb on + strandat 269.947 kb on - strandat 269.947 kb on - strandat 269.947 kb on - strandat 269.947 kb on - strandat 269.947 kb on - strandat 269.953 kb on + strandat 269.953 kb on + strandat 269.953 kb on + strandat 269.953 kb on + strandat 269.953 kb on + strandat 269.953 kb on + strandat 269.954 kb on - strandat 269.954 kb on - strandat 269.954 kb on - strandat 269.954 kb on - strandat 269.963 kb on + strandat 269.963 kb on + strandat 269.963 kb on + strandat 269.964 kb on - strandat 269.994 kb on - strandat 269.994 kb on - strandat 270.011 kb on + strandat 270.033 kb on + strandat 270.033 kb on + strandat 270.033 kb on + strandat 270.034 kb on - strandat 270.061 kb on - strandat 270.061 kb on - strandat 270.062 kb on + strandat 270.062 kb on + strandat 270.062 kb on + strandat 270.062 kb on - strandat 270.063 kb on - strandat 270.142 kb on + strandat 270.142 kb on + strandat 270.143 kb on - strandat 270.143 kb on - strandat 270.277 kb on + strandat 270.277 kb on + strandat 270.277 kb on + strandat 270.277 kb on + strandat 270.277 kb on + strandat 270.277 kb on + strandat 270.277 kb on + strandat 270.277 kb on + strandat 270.278 kb on - strandat 270.278 kb on - strandat 270.278 kb on - strandat 270.458 kb on - strand, within PP_0218at 270.458 kb on - strand, within PP_0218at 270.526 kb on + strand, within PP_0218at 270.527 kb on - strand, within PP_0218at 270.527 kb on - strand, within PP_0218at 270.608 kb on - strand, within PP_0218at 270.664 kb on + strand, within PP_0218at 270.664 kb on + strand, within PP_0218at 270.665 kb on - strand, within PP_0218at 270.721 kb on + strand, within PP_0218at 270.863 kb on + strand, within PP_0218at 270.864 kb on - strand, within PP_0218at 270.864 kb on - strand, within PP_0218at 270.864 kb on - strand, within PP_0218at 270.864 kb on - strand, within PP_0218at 270.882 kb on + strand, within PP_0218at 270.883 kb on - strand, within PP_0218at 270.883 kb on - strand, within PP_0218at 271.047 kb on + strand, within PP_0218at 271.047 kb on + strand, within PP_0218at 271.048 kb on - strand, within PP_0218at 271.171 kb on + strand, within PP_0218at 271.171 kb on + strand, within PP_0218at 271.171 kb on + strand, within PP_0218at 271.171 kb on + strand, within PP_0218at 271.172 kb on - strand, within PP_0218at 271.172 kb on - strand, within PP_0218at 271.201 kb on + strand, within PP_0218at 271.201 kb on + strand, within PP_0218at 271.201 kb on + strand, within PP_0218at 271.201 kb on + strand, within PP_0218at 271.202 kb on - strand, within PP_0218at 271.202 kb on - strand, within PP_0218at 271.211 kb on - strand, within PP_0218at 271.211 kb on - strand, within PP_0218at 271.300 kb on + strand, within PP_0218at 271.300 kb on + strand, within PP_0218at 271.446 kb on + strand, within PP_0218at 271.562 kb on - strand, within PP_0218at 271.857 kb on + strandat 271.948 kb on + strandat 272.082 kb on - strandat 272.136 kb on + strand, within PP_0219at 272.221 kb on + strand, within PP_0219at 272.221 kb on + strand, within PP_0219at 272.221 kb on + strand, within PP_0219at 272.267 kb on + strand, within PP_0219at 272.267 kb on + strand, within PP_0219at 272.267 kb on + strand, within PP_0219at 272.267 kb on + strand, within PP_0219at 272.267 kb on + strand, within PP_0219at 272.267 kb on + strand, within PP_0219at 272.267 kb on + strand, within PP_0219at 272.267 kb on + strand, within PP_0219at 272.268 kb on - strand, within PP_0219at 272.268 kb on - strand, within PP_0219at 272.268 kb on - strand, within PP_0219at 272.418 kb on + strand, within PP_0219at 272.418 kb on + strand, within PP_0219at 272.418 kb on + strand, within PP_0219at 272.418 kb on + strand, within PP_0219at 272.418 kb on + strand, within PP_0219at 272.418 kb on + strand, within PP_0219at 272.419 kb on - strand, within PP_0219at 272.419 kb on - strand, within PP_0219at 272.419 kb on - strand, within PP_0219at 272.419 kb on - strand, within PP_0219at 272.582 kb on + strand, within PP_0219at 272.582 kb on + strand, within PP_0219at 272.583 kb on - strand, within PP_0219at 272.632 kb on + strandat 272.633 kb on - strandat 272.633 kb on - strandat 272.676 kb on + strandat 272.677 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1
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269,319 + PP_0217 0.46 -1.2
269,375 + PP_0217 0.51 -4.2
269,376 - PP_0217 0.51 -1.9
269,486 + PP_0217 0.61 -3.1
269,486 + PP_0217 0.61 -2.0
269,486 + PP_0217 0.61 -0.6
269,498 + PP_0217 0.62 +0.3
269,498 + PP_0217 0.62 -0.6
269,498 + PP_0217 0.62 +0.4
269,498 + PP_0217 0.62 +1.0
269,498 + PP_0217 0.62 +0.1
269,499 - PP_0217 0.62 -2.9
269,499 - PP_0217 0.62 -1.4
269,499 - PP_0217 0.62 -2.7
269,608 - PP_0217 0.71 -2.5
269,608 - PP_0217 0.71 +1.0
269,608 - PP_0217 0.71 -0.9
269,608 - PP_0217 0.71 -3.5
269,647 - PP_0217 0.74 +0.4
269,689 - PP_0217 0.78 -2.6
269,859 + +0.2
269,860 - -0.6
269,944 + +0.2
269,944 + -0.6
269,945 - -3.0
269,946 + -0.2
269,946 + +0.5
269,946 + +1.4
269,947 - -1.4
269,947 - -2.7
269,947 - -1.7
269,947 - -1.7
269,947 - -0.6
269,953 + -0.6
269,953 + +0.2
269,953 + -0.4
269,953 + -0.7
269,953 + -3.3
269,953 + +0.0
269,954 - +1.0
269,954 - -0.9
269,954 - +1.4
269,954 - -0.9
269,963 + -2.3
269,963 + +0.8
269,963 + -0.6
269,964 - -2.3
269,994 - +1.3
269,994 - +2.8
270,011 + +1.0
270,033 + -3.0
270,033 + -1.5
270,033 + -2.0
270,034 - -2.2
270,061 - -1.9
270,061 - +1.4
270,062 + -2.8
270,062 + +0.9
270,062 + +0.6
270,062 - -3.0
270,063 - -1.4
270,142 + +0.7
270,142 + -2.3
270,143 - +1.4
270,143 - +0.4
270,277 + -1.7
270,277 + +0.8
270,277 + +0.1
270,277 + -1.9
270,277 + -1.6
270,277 + -1.5
270,277 + -2.4
270,277 + +2.2
270,278 - -1.4
270,278 - -0.6
270,278 - +0.4
270,458 - PP_0218 0.19 +1.4
270,458 - PP_0218 0.19 -1.9
270,526 + PP_0218 0.22 +0.4
270,527 - PP_0218 0.23 +4.2
270,527 - PP_0218 0.23 -2.0
270,608 - PP_0218 0.27 -1.6
270,664 + PP_0218 0.30 -1.7
270,664 + PP_0218 0.30 -1.6
270,665 - PP_0218 0.30 +1.4
270,721 + PP_0218 0.33 -1.4
270,863 + PP_0218 0.40 -2.2
270,864 - PP_0218 0.40 -0.6
270,864 - PP_0218 0.40 -0.2
270,864 - PP_0218 0.40 -1.0
270,864 - PP_0218 0.40 -1.9
270,882 + PP_0218 0.41 -1.0
270,883 - PP_0218 0.41 -2.0
270,883 - PP_0218 0.41 -2.6
271,047 + PP_0218 0.50 -1.4
271,047 + PP_0218 0.50 -2.3
271,048 - PP_0218 0.50 -1.6
271,171 + PP_0218 0.56 -0.6
271,171 + PP_0218 0.56 +1.4
271,171 + PP_0218 0.56 -1.9
271,171 + PP_0218 0.56 -1.6
271,172 - PP_0218 0.57 -0.2
271,172 - PP_0218 0.57 -2.3
271,201 + PP_0218 0.58 -0.6
271,201 + PP_0218 0.58 -1.9
271,201 + PP_0218 0.58 -2.4
271,201 + PP_0218 0.58 -1.2
271,202 - PP_0218 0.58 -2.5
271,202 - PP_0218 0.58 -1.7
271,211 - PP_0218 0.59 -1.2
271,211 - PP_0218 0.59 -2.0
271,300 + PP_0218 0.63 +0.4
271,300 + PP_0218 0.63 -0.6
271,446 + PP_0218 0.71 -1.4
271,562 - PP_0218 0.77 +0.2
271,857 + -0.6
271,948 + -0.9
272,082 - -2.8
272,136 + PP_0219 0.17 +0.7
272,221 + PP_0219 0.31 +0.4
272,221 + PP_0219 0.31 -1.4
272,221 + PP_0219 0.31 +1.4
272,267 + PP_0219 0.38 -1.0
272,267 + PP_0219 0.38 +0.3
272,267 + PP_0219 0.38 +0.4
272,267 + PP_0219 0.38 -1.4
272,267 + PP_0219 0.38 +0.8
272,267 + PP_0219 0.38 +1.7
272,267 + PP_0219 0.38 +0.8
272,267 + PP_0219 0.38 +0.7
272,268 - PP_0219 0.38 -1.2
272,268 - PP_0219 0.38 -1.0
272,268 - PP_0219 0.38 -2.5
272,418 + PP_0219 0.61 +0.3
272,418 + PP_0219 0.61 -0.4
272,418 + PP_0219 0.61 -0.6
272,418 + PP_0219 0.61 -0.7
272,418 + PP_0219 0.61 -1.7
272,418 + PP_0219 0.61 -2.7
272,419 - PP_0219 0.61 -1.2
272,419 - PP_0219 0.61 -0.6
272,419 - PP_0219 0.61 -0.1
272,419 - PP_0219 0.61 -0.8
272,582 + PP_0219 0.87 -3.0
272,582 + PP_0219 0.87 -0.1
272,583 - PP_0219 0.87 +3.3
272,632 + -2.6
272,633 - +0.3
272,633 - -2.0
272,676 + +0.7
272,677 - -0.7

Or see this region's nucleotide sequence