Strain Fitness in Pseudomonas putida KT2440 around PP_0215

Experiment: P. putida PUT 7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0214 and PP_0215 are separated by 138 nucleotidesPP_0215 and PP_0216 are separated by 90 nucleotides PP_0214: PP_0214 - 4-aminobutyrate aminotransferase, at 264,875 to 266,152 _0214 PP_0215: PP_0215 - Response regulator, at 266,291 to 267,550 _0215 PP_0216: PP_0216 - putative sensory box/GGDEF family protein, at 267,641 to 268,669 _0216 Position (kb) 266 267 268Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 265.300 kb on + strand, within PP_0214at 265.300 kb on + strand, within PP_0214at 265.300 kb on + strand, within PP_0214at 265.340 kb on + strand, within PP_0214at 265.341 kb on - strand, within PP_0214at 265.408 kb on + strand, within PP_0214at 265.500 kb on + strand, within PP_0214at 265.599 kb on + strand, within PP_0214at 265.731 kb on - strand, within PP_0214at 265.766 kb on - strand, within PP_0214at 265.769 kb on + strand, within PP_0214at 265.770 kb on - strand, within PP_0214at 265.902 kb on - strand, within PP_0214at 265.902 kb on - strand, within PP_0214at 266.052 kb on - strandat 266.052 kb on - strandat 266.181 kb on - strandat 266.206 kb on - strandat 266.206 kb on - strandat 266.221 kb on - strandat 266.283 kb on - strandat 266.283 kb on - strandat 266.283 kb on - strandat 266.322 kb on + strandat 266.322 kb on + strandat 266.350 kb on - strandat 266.406 kb on + strandat 266.407 kb on - strandat 266.555 kb on - strand, within PP_0215at 266.610 kb on - strand, within PP_0215at 266.610 kb on - strand, within PP_0215at 266.732 kb on + strand, within PP_0215at 266.733 kb on - strand, within PP_0215at 266.896 kb on + strand, within PP_0215at 266.896 kb on + strand, within PP_0215at 267.080 kb on + strand, within PP_0215at 267.080 kb on + strand, within PP_0215at 267.128 kb on + strand, within PP_0215at 267.128 kb on + strand, within PP_0215at 267.128 kb on + strand, within PP_0215at 267.129 kb on - strand, within PP_0215at 267.323 kb on + strand, within PP_0215at 267.323 kb on + strand, within PP_0215at 267.323 kb on + strand, within PP_0215at 267.323 kb on + strand, within PP_0215at 267.324 kb on - strand, within PP_0215at 267.344 kb on + strand, within PP_0215at 267.345 kb on - strand, within PP_0215at 267.501 kb on + strandat 267.502 kb on - strandat 267.609 kb on + strandat 267.610 kb on - strandat 267.654 kb on - strandat 267.684 kb on + strandat 267.684 kb on + strandat 267.684 kb on + strandat 267.684 kb on + strandat 267.685 kb on - strandat 267.709 kb on - strandat 267.809 kb on + strand, within PP_0216at 267.809 kb on + strand, within PP_0216at 267.810 kb on - strand, within PP_0216at 267.810 kb on - strand, within PP_0216at 267.810 kb on - strand, within PP_0216at 267.856 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.982 kb on - strand, within PP_0216at 267.982 kb on - strand, within PP_0216at 267.982 kb on - strand, within PP_0216at 267.982 kb on - strand, within PP_0216at 267.982 kb on - strand, within PP_0216at 267.982 kb on - strand, within PP_0216at 268.039 kb on + strand, within PP_0216at 268.039 kb on + strand, within PP_0216at 268.039 kb on + strand, within PP_0216at 268.039 kb on + strand, within PP_0216at 268.039 kb on + strand, within PP_0216at 268.040 kb on - strand, within PP_0216at 268.227 kb on + strand, within PP_0216at 268.227 kb on + strand, within PP_0216at 268.228 kb on - strand, within PP_0216at 268.228 kb on - strand, within PP_0216at 268.228 kb on - strand, within PP_0216at 268.228 kb on - strand, within PP_0216at 268.310 kb on + strand, within PP_0216at 268.310 kb on + strand, within PP_0216at 268.311 kb on - strand, within PP_0216at 268.354 kb on - strand, within PP_0216at 268.378 kb on - strand, within PP_0216at 268.422 kb on + strand, within PP_0216at 268.423 kb on - strand, within PP_0216at 268.437 kb on + strand, within PP_0216at 268.437 kb on + strand, within PP_0216at 268.437 kb on + strand, within PP_0216at 268.437 kb on + strand, within PP_0216at 268.437 kb on + strand, within PP_0216at 268.438 kb on - strand, within PP_0216

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1
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265,300 + PP_0214 0.33 +0.6
265,300 + PP_0214 0.33 +2.0
265,300 + PP_0214 0.33 -1.7
265,340 + PP_0214 0.36 -0.9
265,341 - PP_0214 0.36 +0.5
265,408 + PP_0214 0.42 -0.2
265,500 + PP_0214 0.49 -0.2
265,599 + PP_0214 0.57 -2.4
265,731 - PP_0214 0.67 -0.7
265,766 - PP_0214 0.70 -0.3
265,769 + PP_0214 0.70 +0.4
265,770 - PP_0214 0.70 -1.4
265,902 - PP_0214 0.80 -2.3
265,902 - PP_0214 0.80 +1.7
266,052 - -1.6
266,052 - +0.4
266,181 - +0.0
266,206 - +0.6
266,206 - +1.4
266,221 - -2.4
266,283 - +0.1
266,283 - -1.0
266,283 - +0.4
266,322 + -0.9
266,322 + +0.6
266,350 - -2.4
266,406 + -1.1
266,407 - -3.6
266,555 - PP_0215 0.21 -0.3
266,610 - PP_0215 0.25 -2.0
266,610 - PP_0215 0.25 -0.9
266,732 + PP_0215 0.35 -2.4
266,733 - PP_0215 0.35 -1.0
266,896 + PP_0215 0.48 -0.2
266,896 + PP_0215 0.48 -0.6
267,080 + PP_0215 0.63 -0.6
267,080 + PP_0215 0.63 +1.4
267,128 + PP_0215 0.66 +0.8
267,128 + PP_0215 0.66 +0.8
267,128 + PP_0215 0.66 -0.1
267,129 - PP_0215 0.67 +0.7
267,323 + PP_0215 0.82 -2.2
267,323 + PP_0215 0.82 -1.6
267,323 + PP_0215 0.82 -0.7
267,323 + PP_0215 0.82 -1.7
267,324 - PP_0215 0.82 -0.3
267,344 + PP_0215 0.84 +0.6
267,345 - PP_0215 0.84 -2.6
267,501 + +0.2
267,502 - -2.2
267,609 + -2.0
267,610 - -0.6
267,654 - +1.4
267,684 + -1.5
267,684 + -1.9
267,684 + -2.4
267,684 + +0.3
267,685 - -0.8
267,709 - -0.2
267,809 + PP_0216 0.16 +1.2
267,809 + PP_0216 0.16 +0.4
267,810 - PP_0216 0.16 -3.9
267,810 - PP_0216 0.16 -3.1
267,810 - PP_0216 0.16 -2.6
267,856 + PP_0216 0.21 +1.7
267,981 + PP_0216 0.33 -1.4
267,981 + PP_0216 0.33 +1.6
267,981 + PP_0216 0.33 -2.7
267,981 + PP_0216 0.33 -1.0
267,981 + PP_0216 0.33 -3.1
267,981 + PP_0216 0.33 -1.7
267,981 + PP_0216 0.33 -2.6
267,981 + PP_0216 0.33 -1.6
267,981 + PP_0216 0.33 +0.1
267,981 + PP_0216 0.33 -1.0
267,982 - PP_0216 0.33 -2.5
267,982 - PP_0216 0.33 -0.6
267,982 - PP_0216 0.33 -1.2
267,982 - PP_0216 0.33 -0.0
267,982 - PP_0216 0.33 -3.7
267,982 - PP_0216 0.33 -2.8
268,039 + PP_0216 0.39 -2.0
268,039 + PP_0216 0.39 +0.2
268,039 + PP_0216 0.39 +0.3
268,039 + PP_0216 0.39 -3.9
268,039 + PP_0216 0.39 -1.9
268,040 - PP_0216 0.39 -1.6
268,227 + PP_0216 0.57 +0.0
268,227 + PP_0216 0.57 -0.5
268,228 - PP_0216 0.57 -1.6
268,228 - PP_0216 0.57 -0.7
268,228 - PP_0216 0.57 -3.9
268,228 - PP_0216 0.57 -0.6
268,310 + PP_0216 0.65 +1.7
268,310 + PP_0216 0.65 -1.9
268,311 - PP_0216 0.65 -1.2
268,354 - PP_0216 0.69 +0.2
268,378 - PP_0216 0.72 -0.3
268,422 + PP_0216 0.76 -0.2
268,423 - PP_0216 0.76 -0.2
268,437 + PP_0216 0.77 +0.9
268,437 + PP_0216 0.77 -0.7
268,437 + PP_0216 0.77 -0.2
268,437 + PP_0216 0.77 +0.3
268,437 + PP_0216 0.77 +0.4
268,438 - PP_0216 0.77 -0.9

Or see this region's nucleotide sequence