Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0209 and PP_0210 overlap by 4 nucleotides PP_0210 and PP_0211 overlap by 1 nucleotides PP_0211 and PP_0213 are separated by 484 nucleotides
PP_0209: PP_0209 - ATP-binding taurine transporter subunit, at 260,671 to 261,522
_0209
PP_0210: PP_0210 - putative Phycobiliprotein, at 261,519 to 262,484
_0210
PP_0211: PP_0211 - conserved protein of unknown function, at 262,484 to 262,765
_0211
PP_0213: PP_0213 - succinate-semialdehyde dehydrogenase (NADP+), at 263,250 to 264,692
_0213
Position (kb) 262
263 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 261.518 kb on + strand at 261.518 kb on + strand at 261.519 kb on - strand at 261.781 kb on + strand, within PP_0210 at 261.781 kb on + strand, within PP_0210 at 261.782 kb on - strand, within PP_0210 at 261.782 kb on - strand, within PP_0210 at 261.816 kb on - strand, within PP_0210 at 261.816 kb on - strand, within PP_0210 at 261.890 kb on - strand, within PP_0210 at 261.968 kb on - strand, within PP_0210 at 262.180 kb on + strand, within PP_0210 at 262.193 kb on - strand, within PP_0210 at 262.249 kb on + strand, within PP_0210 at 262.249 kb on + strand, within PP_0210 at 262.288 kb on - strand, within PP_0210 at 262.682 kb on + strand, within PP_0211 at 262.683 kb on - strand, within PP_0211 at 262.689 kb on + strand, within PP_0211 at 262.689 kb on + strand, within PP_0211 at 262.689 kb on + strand, within PP_0211 at 262.689 kb on + strand, within PP_0211 at 262.690 kb on - strand, within PP_0211 at 262.727 kb on + strand, within PP_0211 at 262.728 kb on - strand, within PP_0211 at 262.728 kb on - strand, within PP_0211 at 262.739 kb on + strand at 262.739 kb on + strand at 262.740 kb on - strand at 262.838 kb on - strand at 262.902 kb on + strand at 263.052 kb on - strand at 263.147 kb on - strand at 263.147 kb on - strand at 263.289 kb on + strand at 263.289 kb on + strand at 263.289 kb on + strand at 263.289 kb on + strand at 263.289 kb on + strand at 263.289 kb on + strand at 263.289 kb on + strand at 263.290 kb on - strand at 263.290 kb on - strand at 263.290 kb on - strand at 263.291 kb on + strand at 263.291 kb on + strand at 263.292 kb on - strand at 263.292 kb on - strand at 263.292 kb on - strand at 263.297 kb on - strand at 263.628 kb on + strand, within PP_0213 at 263.628 kb on + strand, within PP_0213 at 263.628 kb on + strand, within PP_0213
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 261,518 + +0.0 261,518 + -0.3 261,519 - -0.3 261,781 + PP_0210 0.27 -1.2 261,781 + PP_0210 0.27 -3.1 261,782 - PP_0210 0.27 +0.6 261,782 - PP_0210 0.27 +2.2 261,816 - PP_0210 0.31 -2.9 261,816 - PP_0210 0.31 -0.8 261,890 - PP_0210 0.38 +1.1 261,968 - PP_0210 0.46 -0.2 262,180 + PP_0210 0.68 +0.6 262,193 - PP_0210 0.70 -0.4 262,249 + PP_0210 0.76 -1.2 262,249 + PP_0210 0.76 +0.9 262,288 - PP_0210 0.80 +0.1 262,682 + PP_0211 0.70 -1.3 262,683 - PP_0211 0.71 +0.7 262,689 + PP_0211 0.73 -2.6 262,689 + PP_0211 0.73 -0.4 262,689 + PP_0211 0.73 -0.6 262,689 + PP_0211 0.73 -1.9 262,690 - PP_0211 0.73 -0.7 262,727 + PP_0211 0.86 -0.6 262,728 - PP_0211 0.87 +0.0 262,728 - PP_0211 0.87 -2.0 262,739 + +0.5 262,739 + -1.4 262,740 - -0.6 262,838 - -1.2 262,902 + -1.1 263,052 - -2.1 263,147 - -1.6 263,147 - +1.7 263,289 + +0.2 263,289 + -0.5 263,289 + -3.3 263,289 + -0.2 263,289 + -0.8 263,289 + -1.2 263,289 + -2.1 263,290 - -1.7 263,290 - -1.6 263,290 - -2.2 263,291 + -1.9 263,291 + -2.2 263,292 - +1.4 263,292 - +0.4 263,292 - +0.4 263,297 - -2.8 263,628 + PP_0213 0.26 +1.1 263,628 + PP_0213 0.26 -2.4 263,628 + PP_0213 0.26 -0.2
Or see this region's nucleotide sequence