Strain Fitness in Pseudomonas putida KT2440 around PP_0209

Experiment: P. putida PUT 7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0207 and PP_0208 are separated by 15 nucleotidesPP_0208 and PP_0209 overlap by 1 nucleotidesPP_0209 and PP_0210 overlap by 4 nucleotidesPP_0210 and PP_0211 overlap by 1 nucleotides PP_0207: PP_0207 - putative Nitrate ABC transporter, periplasmic nitrate-binding protein, at 258,467 to 259,873 _0207 PP_0208: PP_0208 - putative Nitrate ABC transporter, permease protein, at 259,889 to 260,671 _0208 PP_0209: PP_0209 - ATP-binding taurine transporter subunit, at 260,671 to 261,522 _0209 PP_0210: PP_0210 - putative Phycobiliprotein, at 261,519 to 262,484 _0210 PP_0211: PP_0211 - conserved protein of unknown function, at 262,484 to 262,765 _0211 Position (kb) 260 261 262Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 259.691 kb on + strand, within PP_0207at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.011 kb on + strand, within PP_0208at 260.012 kb on - strand, within PP_0208at 260.012 kb on - strand, within PP_0208at 260.097 kb on + strand, within PP_0208at 260.098 kb on - strand, within PP_0208at 260.098 kb on - strand, within PP_0208at 260.108 kb on + strand, within PP_0208at 260.109 kb on - strand, within PP_0208at 260.176 kb on + strand, within PP_0208at 260.177 kb on - strand, within PP_0208at 260.409 kb on + strand, within PP_0208at 260.409 kb on + strand, within PP_0208at 260.410 kb on - strand, within PP_0208at 260.461 kb on + strand, within PP_0208at 260.461 kb on + strand, within PP_0208at 260.461 kb on + strand, within PP_0208at 260.462 kb on - strand, within PP_0208at 260.462 kb on - strand, within PP_0208at 260.462 kb on - strand, within PP_0208at 260.520 kb on - strand, within PP_0208at 260.522 kb on + strand, within PP_0208at 260.522 kb on + strand, within PP_0208at 260.522 kb on + strand, within PP_0208at 260.523 kb on - strand, within PP_0208at 260.523 kb on - strand, within PP_0208at 260.523 kb on - strand, within PP_0208at 260.537 kb on + strand, within PP_0208at 260.537 kb on + strand, within PP_0208at 260.537 kb on + strand, within PP_0208at 260.538 kb on - strand, within PP_0208at 260.649 kb on - strandat 260.680 kb on + strandat 260.700 kb on + strandat 260.964 kb on + strand, within PP_0209at 260.965 kb on - strand, within PP_0209at 261.229 kb on - strand, within PP_0209at 261.229 kb on - strand, within PP_0209at 261.411 kb on + strand, within PP_0209at 261.411 kb on + strand, within PP_0209at 261.411 kb on + strand, within PP_0209at 261.412 kb on - strand, within PP_0209at 261.518 kb on + strandat 261.518 kb on + strandat 261.519 kb on - strandat 261.781 kb on + strand, within PP_0210at 261.781 kb on + strand, within PP_0210at 261.782 kb on - strand, within PP_0210at 261.782 kb on - strand, within PP_0210at 261.816 kb on - strand, within PP_0210at 261.816 kb on - strand, within PP_0210at 261.890 kb on - strand, within PP_0210at 261.968 kb on - strand, within PP_0210at 262.180 kb on + strand, within PP_0210at 262.193 kb on - strand, within PP_0210at 262.249 kb on + strand, within PP_0210at 262.249 kb on + strand, within PP_0210at 262.288 kb on - strand, within PP_0210

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1
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259,691 + PP_0207 0.87 -0.6
260,003 + PP_0208 0.15 -0.2
260,003 + PP_0208 0.15 +0.1
260,003 + PP_0208 0.15 -2.2
260,003 + PP_0208 0.15 -0.3
260,003 + PP_0208 0.15 -0.7
260,003 + PP_0208 0.15 -0.2
260,003 + PP_0208 0.15 +2.4
260,003 + PP_0208 0.15 +0.4
260,003 + PP_0208 0.15 -2.3
260,003 + PP_0208 0.15 -3.0
260,003 + PP_0208 0.15 +0.7
260,004 - PP_0208 0.15 +0.8
260,004 - PP_0208 0.15 -1.1
260,004 - PP_0208 0.15 +0.1
260,004 - PP_0208 0.15 -0.7
260,004 - PP_0208 0.15 -1.0
260,004 - PP_0208 0.15 -0.8
260,004 - PP_0208 0.15 -1.4
260,011 + PP_0208 0.16 -1.1
260,012 - PP_0208 0.16 -2.4
260,012 - PP_0208 0.16 -3.4
260,097 + PP_0208 0.27 -0.7
260,098 - PP_0208 0.27 -0.8
260,098 - PP_0208 0.27 -2.7
260,108 + PP_0208 0.28 +0.4
260,109 - PP_0208 0.28 -2.9
260,176 + PP_0208 0.37 +1.0
260,177 - PP_0208 0.37 -2.3
260,409 + PP_0208 0.66 -2.3
260,409 + PP_0208 0.66 -0.4
260,410 - PP_0208 0.67 -3.0
260,461 + PP_0208 0.73 -0.5
260,461 + PP_0208 0.73 -3.2
260,461 + PP_0208 0.73 -1.6
260,462 - PP_0208 0.73 +0.7
260,462 - PP_0208 0.73 -0.4
260,462 - PP_0208 0.73 -0.9
260,520 - PP_0208 0.81 -0.4
260,522 + PP_0208 0.81 -1.7
260,522 + PP_0208 0.81 +0.4
260,522 + PP_0208 0.81 -3.0
260,523 - PP_0208 0.81 +0.4
260,523 - PP_0208 0.81 -0.6
260,523 - PP_0208 0.81 +0.4
260,537 + PP_0208 0.83 -1.9
260,537 + PP_0208 0.83 -1.3
260,537 + PP_0208 0.83 +1.4
260,538 - PP_0208 0.83 -0.4
260,649 - -2.9
260,680 + +2.1
260,700 + -1.2
260,964 + PP_0209 0.34 +0.8
260,965 - PP_0209 0.35 -0.8
261,229 - PP_0209 0.65 -1.1
261,229 - PP_0209 0.65 -0.3
261,411 + PP_0209 0.87 -2.6
261,411 + PP_0209 0.87 -1.5
261,411 + PP_0209 0.87 -1.9
261,412 - PP_0209 0.87 -0.1
261,518 + +0.0
261,518 + -0.3
261,519 - -0.3
261,781 + PP_0210 0.27 -1.2
261,781 + PP_0210 0.27 -3.1
261,782 - PP_0210 0.27 +0.6
261,782 - PP_0210 0.27 +2.2
261,816 - PP_0210 0.31 -2.9
261,816 - PP_0210 0.31 -0.8
261,890 - PP_0210 0.38 +1.1
261,968 - PP_0210 0.46 -0.2
262,180 + PP_0210 0.68 +0.6
262,193 - PP_0210 0.70 -0.4
262,249 + PP_0210 0.76 -1.2
262,249 + PP_0210 0.76 +0.9
262,288 - PP_0210 0.80 +0.1

Or see this region's nucleotide sequence