Strain Fitness in Pseudomonas putida KT2440 around PP_0161

Experiment: P. putida PUT 7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0160 and PP_0161 are separated by 93 nucleotidesPP_0161 and PP_0162 are separated by 4 nucleotidesPP_0162 and PP_0163 are separated by 88 nucleotides PP_0160: PP_0160 - putative ferrioxamine receptor, at 182,076 to 184,562 _0160 PP_0161: PP_0161 - putative transmembrane sensor, at 184,656 to 185,612 _0161 PP_0162: PP_0162 - RNA polymerase sigma-70 factor, ECF subfamily, at 185,617 to 186,138 _0162 PP_0163: PP_0163 - putative transcriptional regulator, at 186,227 to 186,916 _0163 Position (kb) 184 185 186Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 183.662 kb on + strand, within PP_0160at 183.663 kb on - strand, within PP_0160at 183.663 kb on - strand, within PP_0160at 183.668 kb on + strand, within PP_0160at 183.668 kb on + strand, within PP_0160at 183.669 kb on - strand, within PP_0160at 183.688 kb on + strand, within PP_0160at 183.689 kb on - strand, within PP_0160at 183.689 kb on - strand, within PP_0160at 183.689 kb on - strand, within PP_0160at 183.723 kb on + strand, within PP_0160at 183.751 kb on + strand, within PP_0160at 183.752 kb on - strand, within PP_0160at 183.756 kb on + strand, within PP_0160at 183.799 kb on + strand, within PP_0160at 183.799 kb on + strand, within PP_0160at 183.799 kb on + strand, within PP_0160at 183.799 kb on + strand, within PP_0160at 183.799 kb on + strand, within PP_0160at 183.799 kb on + strand, within PP_0160at 183.799 kb on + strand, within PP_0160at 183.799 kb on + strand, within PP_0160at 183.800 kb on - strand, within PP_0160at 183.800 kb on - strand, within PP_0160at 183.800 kb on - strand, within PP_0160at 183.800 kb on - strand, within PP_0160at 183.807 kb on + strand, within PP_0160at 183.808 kb on - strand, within PP_0160at 183.823 kb on + strand, within PP_0160at 183.824 kb on - strand, within PP_0160at 183.824 kb on - strand, within PP_0160at 183.824 kb on - strand, within PP_0160at 183.862 kb on + strand, within PP_0160at 183.862 kb on + strand, within PP_0160at 183.862 kb on + strand, within PP_0160at 183.862 kb on + strand, within PP_0160at 183.862 kb on + strand, within PP_0160at 183.862 kb on + strand, within PP_0160at 183.863 kb on - strand, within PP_0160at 183.863 kb on - strand, within PP_0160at 183.863 kb on - strand, within PP_0160at 183.863 kb on - strand, within PP_0160at 183.903 kb on + strand, within PP_0160at 183.903 kb on + strand, within PP_0160at 183.903 kb on + strand, within PP_0160at 183.903 kb on + strand, within PP_0160at 183.903 kb on + strand, within PP_0160at 183.904 kb on - strand, within PP_0160at 183.904 kb on - strand, within PP_0160at 183.904 kb on - strand, within PP_0160at 183.904 kb on - strand, within PP_0160at 183.904 kb on - strand, within PP_0160at 183.904 kb on - strand, within PP_0160at 183.904 kb on - strand, within PP_0160at 183.904 kb on - strand, within PP_0160at 183.907 kb on + strand, within PP_0160at 183.907 kb on + strand, within PP_0160at 183.907 kb on + strand, within PP_0160at 183.907 kb on + strand, within PP_0160at 183.907 kb on + strand, within PP_0160at 183.907 kb on + strand, within PP_0160at 183.907 kb on + strand, within PP_0160at 183.907 kb on + strand, within PP_0160at 183.907 kb on + strand, within PP_0160at 183.907 kb on + strand, within PP_0160at 183.907 kb on + strand, within PP_0160at 183.908 kb on - strand, within PP_0160at 183.908 kb on - strand, within PP_0160at 183.908 kb on - strand, within PP_0160at 183.908 kb on - strand, within PP_0160at 183.908 kb on - strand, within PP_0160at 183.908 kb on - strand, within PP_0160at 183.908 kb on - strand, within PP_0160at 183.908 kb on - strand, within PP_0160at 183.908 kb on - strand, within PP_0160at 183.913 kb on + strand, within PP_0160at 183.931 kb on + strand, within PP_0160at 183.945 kb on + strand, within PP_0160at 184.013 kb on + strand, within PP_0160at 184.013 kb on + strand, within PP_0160at 184.090 kb on + strand, within PP_0160at 184.091 kb on - strand, within PP_0160at 184.091 kb on - strand, within PP_0160at 184.091 kb on - strand, within PP_0160at 184.091 kb on - strand, within PP_0160at 184.130 kb on + strand, within PP_0160at 184.130 kb on + strand, within PP_0160at 184.130 kb on + strand, within PP_0160at 184.130 kb on + strand, within PP_0160at 184.131 kb on - strand, within PP_0160at 184.189 kb on + strand, within PP_0160at 184.189 kb on + strand, within PP_0160at 184.189 kb on + strand, within PP_0160at 184.189 kb on + strand, within PP_0160at 184.189 kb on + strandat 184.190 kb on - strand, within PP_0160at 184.190 kb on - strand, within PP_0160at 184.190 kb on - strand, within PP_0160at 184.190 kb on - strand, within PP_0160at 184.190 kb on - strand, within PP_0160at 184.193 kb on + strand, within PP_0160at 184.193 kb on + strand, within PP_0160at 184.193 kb on + strand, within PP_0160at 184.193 kb on + strand, within PP_0160at 184.193 kb on + strand, within PP_0160at 184.193 kb on + strand, within PP_0160at 184.193 kb on + strand, within PP_0160at 184.193 kb on + strand, within PP_0160at 184.194 kb on - strand, within PP_0160at 184.194 kb on - strand, within PP_0160at 184.194 kb on - strand, within PP_0160at 184.194 kb on - strand, within PP_0160at 184.194 kb on - strand, within PP_0160at 184.194 kb on - strand, within PP_0160at 184.194 kb on - strand, within PP_0160at 184.194 kb on - strand, within PP_0160at 184.194 kb on - strand, within PP_0160at 184.264 kb on + strand, within PP_0160at 184.265 kb on - strand, within PP_0160at 184.320 kb on + strandat 184.320 kb on + strandat 184.380 kb on + strandat 184.381 kb on - strandat 184.387 kb on + strandat 184.387 kb on + strandat 184.388 kb on - strandat 184.388 kb on - strandat 184.388 kb on - strandat 184.388 kb on - strandat 184.543 kb on - strandat 184.557 kb on - strandat 184.557 kb on - strandat 184.557 kb on - strandat 184.574 kb on + strandat 184.575 kb on - strandat 184.575 kb on - strandat 184.575 kb on - strandat 184.602 kb on + strandat 184.602 kb on + strandat 184.603 kb on - strandat 184.603 kb on - strandat 184.603 kb on - strandat 184.603 kb on - strandat 184.603 kb on - strandat 184.655 kb on - strandat 184.671 kb on + strandat 184.671 kb on + strandat 184.671 kb on + strandat 184.671 kb on + strandat 184.672 kb on - strandat 184.672 kb on - strandat 184.672 kb on - strandat 184.672 kb on - strandat 184.708 kb on - strandat 184.810 kb on + strand, within PP_0161at 184.998 kb on + strand, within PP_0161at 185.051 kb on - strand, within PP_0161at 185.100 kb on + strand, within PP_0161at 185.100 kb on + strand, within PP_0161at 185.100 kb on + strand, within PP_0161at 185.100 kb on + strand, within PP_0161at 185.100 kb on + strand, within PP_0161at 185.106 kb on + strand, within PP_0161at 185.204 kb on + strand, within PP_0161at 185.447 kb on + strand, within PP_0161at 185.447 kb on + strand, within PP_0161at 185.447 kb on + strand, within PP_0161at 185.447 kb on + strand, within PP_0161at 185.447 kb on + strand, within PP_0161at 185.448 kb on - strand, within PP_0161at 185.448 kb on - strand, within PP_0161at 185.448 kb on - strand, within PP_0161at 185.462 kb on + strand, within PP_0161at 185.462 kb on + strand, within PP_0161at 185.463 kb on - strand, within PP_0161at 185.463 kb on - strand, within PP_0161at 185.633 kb on + strandat 185.645 kb on + strandat 185.645 kb on + strandat 185.654 kb on + strandat 185.654 kb on + strandat 185.655 kb on - strandat 185.655 kb on - strandat 185.655 kb on - strandat 185.672 kb on + strand, within PP_0162at 185.673 kb on - strand, within PP_0162at 185.673 kb on - strand, within PP_0162at 185.764 kb on + strand, within PP_0162at 185.764 kb on + strand, within PP_0162at 185.764 kb on + strand, within PP_0162at 185.800 kb on - strand, within PP_0162at 185.989 kb on + strand, within PP_0162at 185.989 kb on + strand, within PP_0162at 185.989 kb on + strand, within PP_0162at 185.990 kb on - strand, within PP_0162at 185.990 kb on - strand, within PP_0162at 185.990 kb on - strand, within PP_0162at 186.006 kb on + strand, within PP_0162at 186.006 kb on + strand, within PP_0162at 186.007 kb on - strand, within PP_0162at 186.051 kb on + strand, within PP_0162at 186.052 kb on - strand, within PP_0162at 186.063 kb on + strand, within PP_0162at 186.063 kb on + strand, within PP_0162at 186.063 kb on + strand, within PP_0162at 186.063 kb on + strand, within PP_0162at 186.063 kb on + strand, within PP_0162at 186.063 kb on + strand, within PP_0162at 186.064 kb on - strand, within PP_0162at 186.064 kb on - strand, within PP_0162at 186.089 kb on + strandat 186.090 kb on - strandat 186.090 kb on - strandat 186.090 kb on - strandat 186.159 kb on + strandat 186.185 kb on + strandat 186.205 kb on - strandat 186.220 kb on + strandat 186.229 kb on - strandat 186.252 kb on + strandat 186.253 kb on - strandat 186.338 kb on + strand, within PP_0163at 186.338 kb on + strand, within PP_0163at 186.339 kb on - strand, within PP_0163at 186.446 kb on + strand, within PP_0163at 186.446 kb on + strand, within PP_0163at 186.447 kb on - strand, within PP_0163at 186.447 kb on - strand, within PP_0163at 186.471 kb on + strand, within PP_0163at 186.472 kb on - strand, within PP_0163at 186.472 kb on - strand, within PP_0163at 186.545 kb on - strand, within PP_0163at 186.545 kb on - strand, within PP_0163at 186.547 kb on - strand, within PP_0163at 186.547 kb on - strand, within PP_0163

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1
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183,662 + PP_0160 0.64 +1.3
183,663 - PP_0160 0.64 +2.0
183,663 - PP_0160 0.64 +0.7
183,668 + PP_0160 0.64 +1.5
183,668 + PP_0160 0.64 -3.1
183,669 - PP_0160 0.64 +1.0
183,688 + PP_0160 0.65 +2.4
183,689 - PP_0160 0.65 +0.9
183,689 - PP_0160 0.65 +1.5
183,689 - PP_0160 0.65 +1.3
183,723 + PP_0160 0.66 +0.8
183,751 + PP_0160 0.67 +0.2
183,752 - PP_0160 0.67 -1.0
183,756 + PP_0160 0.68 -1.0
183,799 + PP_0160 0.69 +0.2
183,799 + PP_0160 0.69 +1.8
183,799 + PP_0160 0.69 +1.6
183,799 + PP_0160 0.69 -0.3
183,799 + PP_0160 0.69 +0.9
183,799 + PP_0160 0.69 +0.9
183,799 + PP_0160 0.69 +0.3
183,799 + PP_0160 0.69 +1.6
183,800 - PP_0160 0.69 +0.8
183,800 - PP_0160 0.69 +1.7
183,800 - PP_0160 0.69 +1.7
183,800 - PP_0160 0.69 +0.3
183,807 + PP_0160 0.70 +1.9
183,808 - PP_0160 0.70 +0.6
183,823 + PP_0160 0.70 +0.4
183,824 - PP_0160 0.70 +1.2
183,824 - PP_0160 0.70 +0.5
183,824 - PP_0160 0.70 +1.2
183,862 + PP_0160 0.72 +2.3
183,862 + PP_0160 0.72 +0.7
183,862 + PP_0160 0.72 +1.1
183,862 + PP_0160 0.72 -0.4
183,862 + PP_0160 0.72 +0.7
183,862 + PP_0160 0.72 -0.3
183,863 - PP_0160 0.72 -0.7
183,863 - PP_0160 0.72 +0.7
183,863 - PP_0160 0.72 -0.4
183,863 - PP_0160 0.72 -0.8
183,903 + PP_0160 0.73 -0.5
183,903 + PP_0160 0.73 +0.5
183,903 + PP_0160 0.73 +0.3
183,903 + PP_0160 0.73 +0.7
183,903 + PP_0160 0.73 +0.6
183,904 - PP_0160 0.74 +1.6
183,904 - PP_0160 0.74 +1.0
183,904 - PP_0160 0.74 +0.1
183,904 - PP_0160 0.74 +1.4
183,904 - PP_0160 0.74 +0.6
183,904 - PP_0160 0.74 +0.3
183,904 - PP_0160 0.74 -3.4
183,904 - PP_0160 0.74 +1.7
183,907 + PP_0160 0.74 +1.3
183,907 + PP_0160 0.74 +1.6
183,907 + PP_0160 0.74 -0.3
183,907 + PP_0160 0.74 +0.1
183,907 + PP_0160 0.74 -1.7
183,907 + PP_0160 0.74 +1.3
183,907 + PP_0160 0.74 +1.0
183,907 + PP_0160 0.74 -0.3
183,907 + PP_0160 0.74 +0.8
183,907 + PP_0160 0.74 +1.3
183,907 + PP_0160 0.74 +0.5
183,908 - PP_0160 0.74 +1.1
183,908 - PP_0160 0.74 +1.7
183,908 - PP_0160 0.74 +2.7
183,908 - PP_0160 0.74 +0.8
183,908 - PP_0160 0.74 +2.9
183,908 - PP_0160 0.74 +0.0
183,908 - PP_0160 0.74 -0.3
183,908 - PP_0160 0.74 +1.5
183,908 - PP_0160 0.74 +1.8
183,913 + PP_0160 0.74 -0.5
183,931 + PP_0160 0.75 -1.5
183,945 + PP_0160 0.75 +1.8
184,013 + PP_0160 0.78 +1.3
184,013 + PP_0160 0.78 +0.5
184,090 + PP_0160 0.81 +1.9
184,091 - PP_0160 0.81 +0.6
184,091 - PP_0160 0.81 +1.4
184,091 - PP_0160 0.81 +1.2
184,091 - PP_0160 0.81 -0.3
184,130 + PP_0160 0.83 +1.0
184,130 + PP_0160 0.83 +0.5
184,130 + PP_0160 0.83 +0.9
184,130 + PP_0160 0.83 +0.6
184,131 - PP_0160 0.83 +2.0
184,189 + PP_0160 0.85 +0.5
184,189 + PP_0160 0.85 +1.2
184,189 + PP_0160 0.85 +1.2
184,189 + PP_0160 0.85 +0.8
184,189 + +1.9
184,190 - PP_0160 0.85 -1.9
184,190 - PP_0160 0.85 -3.6
184,190 - PP_0160 0.85 +1.2
184,190 - PP_0160 0.85 +1.4
184,190 - PP_0160 0.85 +0.5
184,193 + PP_0160 0.85 +0.7
184,193 + PP_0160 0.85 +1.3
184,193 + PP_0160 0.85 +1.4
184,193 + PP_0160 0.85 +1.9
184,193 + PP_0160 0.85 +0.7
184,193 + PP_0160 0.85 +1.1
184,193 + PP_0160 0.85 +2.3
184,193 + PP_0160 0.85 +1.9
184,194 - PP_0160 0.85 +1.3
184,194 - PP_0160 0.85 +1.0
184,194 - PP_0160 0.85 +1.0
184,194 - PP_0160 0.85 +0.3
184,194 - PP_0160 0.85 +1.6
184,194 - PP_0160 0.85 +1.5
184,194 - PP_0160 0.85 +0.1
184,194 - PP_0160 0.85 -1.3
184,194 - PP_0160 0.85 +1.0
184,264 + PP_0160 0.88 +2.5
184,265 - PP_0160 0.88 +0.5
184,320 + -1.7
184,320 + +1.7
184,380 + +0.7
184,381 - +1.0
184,387 + -1.7
184,387 + +1.1
184,388 - -0.3
184,388 - +2.2
184,388 - +2.8
184,388 - +1.8
184,543 - +1.5
184,557 - +1.2
184,557 - +2.3
184,557 - +0.7
184,574 + +1.9
184,575 - +2.9
184,575 - +1.7
184,575 - +1.1
184,602 + -2.8
184,602 + +1.5
184,603 - +0.9
184,603 - +1.5
184,603 - -1.8
184,603 - +0.7
184,603 - -1.7
184,655 - -0.3
184,671 + +1.0
184,671 + +1.0
184,671 + -1.4
184,671 + +1.8
184,672 - +0.2
184,672 - +2.3
184,672 - +0.3
184,672 - +1.1
184,708 - +0.2
184,810 + PP_0161 0.16 +0.9
184,998 + PP_0161 0.36 +3.7
185,051 - PP_0161 0.41 +0.2
185,100 + PP_0161 0.46 +2.3
185,100 + PP_0161 0.46 +0.9
185,100 + PP_0161 0.46 +1.1
185,100 + PP_0161 0.46 +1.4
185,100 + PP_0161 0.46 +2.7
185,106 + PP_0161 0.47 +0.7
185,204 + PP_0161 0.57 +1.7
185,447 + PP_0161 0.83 +2.0
185,447 + PP_0161 0.83 +1.9
185,447 + PP_0161 0.83 +0.5
185,447 + PP_0161 0.83 +1.2
185,447 + PP_0161 0.83 +1.8
185,448 - PP_0161 0.83 +0.7
185,448 - PP_0161 0.83 +0.9
185,448 - PP_0161 0.83 -1.5
185,462 + PP_0161 0.84 +0.6
185,462 + PP_0161 0.84 +1.2
185,463 - PP_0161 0.84 +0.6
185,463 - PP_0161 0.84 +2.2
185,633 + +1.5
185,645 + -0.1
185,645 + +0.7
185,654 + +0.3
185,654 + +2.2
185,655 - +0.8
185,655 - +0.8
185,655 - +0.2
185,672 + PP_0162 0.11 -1.7
185,673 - PP_0162 0.11 +1.2
185,673 - PP_0162 0.11 +1.4
185,764 + PP_0162 0.28 -0.3
185,764 + PP_0162 0.28 +1.2
185,764 + PP_0162 0.28 -0.6
185,800 - PP_0162 0.35 +0.3
185,989 + PP_0162 0.71 +2.8
185,989 + PP_0162 0.71 +1.9
185,989 + PP_0162 0.71 -1.5
185,990 - PP_0162 0.71 +0.5
185,990 - PP_0162 0.71 +1.3
185,990 - PP_0162 0.71 +1.5
186,006 + PP_0162 0.75 -2.0
186,006 + PP_0162 0.75 -0.2
186,007 - PP_0162 0.75 -0.2
186,051 + PP_0162 0.83 +1.7
186,052 - PP_0162 0.83 +1.6
186,063 + PP_0162 0.85 -0.2
186,063 + PP_0162 0.85 +1.7
186,063 + PP_0162 0.85 +0.9
186,063 + PP_0162 0.85 +1.2
186,063 + PP_0162 0.85 +0.8
186,063 + PP_0162 0.85 +0.3
186,064 - PP_0162 0.86 +1.2
186,064 - PP_0162 0.86 +0.9
186,089 + +1.1
186,090 - +2.3
186,090 - +1.1
186,090 - -0.8
186,159 + +1.5
186,185 + +0.5
186,205 - +1.8
186,220 + +0.4
186,229 - +1.7
186,252 + -0.8
186,253 - +3.3
186,338 + PP_0163 0.16 +1.4
186,338 + PP_0163 0.16 +1.9
186,339 - PP_0163 0.16 +3.3
186,446 + PP_0163 0.32 +0.5
186,446 + PP_0163 0.32 +0.0
186,447 - PP_0163 0.32 +0.6
186,447 - PP_0163 0.32 +0.2
186,471 + PP_0163 0.35 +0.8
186,472 - PP_0163 0.36 -0.5
186,472 - PP_0163 0.36 +0.4
186,545 - PP_0163 0.46 +1.3
186,545 - PP_0163 0.46 +1.2
186,547 - PP_0163 0.46 +2.0
186,547 - PP_0163 0.46 +2.1

Or see this region's nucleotide sequence