Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0147 and PP_0148 are separated by 264 nucleotides PP_0148 and PP_0149 are separated by 38 nucleotides
PP_0147: PP_0147 - Citrate transporter, at 156,418 to 157,725
_0147
PP_0148: PP_0148 - conserved protein of unknown function, at 157,990 to 158,394
_0148
PP_0149: PP_0149 - conserved exported protein of unknown function, at 158,433 to 160,388
_0149
Position (kb) 157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 157.028 kb on + strand, within PP_0147 at 157.028 kb on + strand, within PP_0147 at 157.029 kb on - strand, within PP_0147 at 157.029 kb on - strand, within PP_0147 at 157.142 kb on + strand, within PP_0147 at 157.142 kb on + strand, within PP_0147 at 157.142 kb on + strand, within PP_0147 at 157.142 kb on + strand, within PP_0147 at 157.142 kb on + strand, within PP_0147 at 157.142 kb on + strand, within PP_0147 at 157.143 kb on - strand, within PP_0147 at 157.143 kb on - strand, within PP_0147 at 157.143 kb on - strand, within PP_0147 at 157.148 kb on + strand, within PP_0147 at 157.148 kb on + strand, within PP_0147 at 157.149 kb on - strand, within PP_0147 at 157.149 kb on - strand, within PP_0147 at 157.149 kb on - strand, within PP_0147 at 157.149 kb on - strand, within PP_0147 at 157.172 kb on - strand, within PP_0147 at 157.201 kb on + strand, within PP_0147 at 157.223 kb on - strand, within PP_0147 at 157.340 kb on + strand at 157.340 kb on + strand, within PP_0147 at 157.340 kb on + strand, within PP_0147 at 157.341 kb on - strand, within PP_0147 at 157.341 kb on - strand, within PP_0147 at 157.373 kb on + strand, within PP_0147 at 157.373 kb on + strand, within PP_0147 at 157.373 kb on + strand, within PP_0147 at 157.373 kb on + strand, within PP_0147 at 157.373 kb on + strand, within PP_0147 at 157.373 kb on + strand, within PP_0147 at 157.374 kb on - strand, within PP_0147 at 157.374 kb on - strand, within PP_0147 at 157.374 kb on - strand, within PP_0147 at 157.418 kb on - strand, within PP_0147 at 157.520 kb on + strand, within PP_0147 at 157.521 kb on - strand, within PP_0147 at 157.577 kb on - strand, within PP_0147 at 157.682 kb on + strand at 157.682 kb on + strand at 157.682 kb on + strand at 157.682 kb on + strand at 157.683 kb on - strand at 157.731 kb on + strand at 157.731 kb on + strand at 157.731 kb on + strand at 157.731 kb on + strand at 157.732 kb on - strand at 157.817 kb on + strand at 157.839 kb on + strand at 157.839 kb on + strand at 157.839 kb on + strand at 157.839 kb on + strand at 157.839 kb on + strand at 157.839 kb on + strand at 157.839 kb on + strand at 157.840 kb on - strand at 157.840 kb on - strand at 157.840 kb on - strand at 157.840 kb on - strand at 157.840 kb on - strand at 157.922 kb on - strand at 157.936 kb on + strand at 157.936 kb on + strand at 157.936 kb on + strand at 157.987 kb on + strand at 157.987 kb on + strand at 157.988 kb on - strand at 158.004 kb on - strand at 158.004 kb on - strand at 158.175 kb on + strand, within PP_0148 at 158.176 kb on + strand, within PP_0148 at 158.176 kb on + strand, within PP_0148 at 158.176 kb on + strand, within PP_0148 at 158.176 kb on + strand, within PP_0148 at 158.176 kb on + strand, within PP_0148 at 158.176 kb on + strand, within PP_0148 at 158.176 kb on + strand, within PP_0148 at 158.177 kb on - strand, within PP_0148 at 158.177 kb on - strand, within PP_0148 at 158.177 kb on - strand, within PP_0148 at 158.177 kb on - strand, within PP_0148 at 158.203 kb on + strand, within PP_0148 at 158.251 kb on - strand, within PP_0148 at 158.304 kb on - strand, within PP_0148 at 158.319 kb on + strand, within PP_0148 at 158.319 kb on + strand at 158.319 kb on + strand, within PP_0148 at 158.319 kb on + strand, within PP_0148 at 158.319 kb on + strand, within PP_0148 at 158.320 kb on - strand, within PP_0148 at 158.320 kb on - strand, within PP_0148 at 158.320 kb on - strand, within PP_0148 at 158.320 kb on - strand, within PP_0148 at 158.320 kb on - strand, within PP_0148 at 158.393 kb on - strand at 158.429 kb on + strand at 158.429 kb on + strand at 158.429 kb on + strand at 158.429 kb on + strand at 158.429 kb on + strand at 158.430 kb on - strand at 158.430 kb on - strand at 158.430 kb on - strand at 158.430 kb on - strand at 158.430 kb on - strand at 158.430 kb on - strand at 158.430 kb on - strand at 158.430 kb on - strand at 158.430 kb on - strand at 158.430 kb on - strand at 158.430 kb on - strand at 158.770 kb on + strand, within PP_0149 at 158.770 kb on + strand, within PP_0149 at 158.771 kb on - strand, within PP_0149 at 158.880 kb on - strand, within PP_0149 at 158.937 kb on + strand, within PP_0149 at 159.041 kb on + strand at 159.041 kb on + strand, within PP_0149 at 159.042 kb on - strand, within PP_0149 at 159.042 kb on - strand, within PP_0149 at 159.042 kb on - strand, within PP_0149 at 159.042 kb on - strand, within PP_0149 at 159.193 kb on + strand, within PP_0149 at 159.193 kb on + strand, within PP_0149 at 159.193 kb on + strand, within PP_0149 at 159.193 kb on + strand, within PP_0149 at 159.194 kb on - strand, within PP_0149 at 159.194 kb on - strand, within PP_0149 at 159.194 kb on - strand, within PP_0149 at 159.194 kb on - strand, within PP_0149 at 159.194 kb on - strand, within PP_0149 at 159.194 kb on - strand, within PP_0149 at 159.295 kb on + strand, within PP_0149 at 159.295 kb on + strand, within PP_0149 at 159.296 kb on - strand, within PP_0149 at 159.343 kb on + strand, within PP_0149
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 157,028 + PP_0147 0.47 +1.9 157,028 + PP_0147 0.47 +1.4 157,029 - PP_0147 0.47 +1.2 157,029 - PP_0147 0.47 +2.9 157,142 + PP_0147 0.55 +1.3 157,142 + PP_0147 0.55 +0.3 157,142 + PP_0147 0.55 -1.3 157,142 + PP_0147 0.55 +0.5 157,142 + PP_0147 0.55 -0.5 157,142 + PP_0147 0.55 +0.7 157,143 - PP_0147 0.55 +2.0 157,143 - PP_0147 0.55 +0.9 157,143 - PP_0147 0.55 +1.5 157,148 + PP_0147 0.56 +1.5 157,148 + PP_0147 0.56 -0.6 157,149 - PP_0147 0.56 +0.6 157,149 - PP_0147 0.56 +1.0 157,149 - PP_0147 0.56 -0.8 157,149 - PP_0147 0.56 +0.3 157,172 - PP_0147 0.58 -0.0 157,201 + PP_0147 0.60 +0.1 157,223 - PP_0147 0.62 +0.7 157,340 + +1.3 157,340 + PP_0147 0.70 +1.4 157,340 + PP_0147 0.70 -0.3 157,341 - PP_0147 0.71 +2.2 157,341 - PP_0147 0.71 -0.4 157,373 + PP_0147 0.73 +1.3 157,373 + PP_0147 0.73 -0.1 157,373 + PP_0147 0.73 +2.6 157,373 + PP_0147 0.73 -0.1 157,373 + PP_0147 0.73 -1.3 157,373 + PP_0147 0.73 +0.4 157,374 - PP_0147 0.73 +0.2 157,374 - PP_0147 0.73 +2.5 157,374 - PP_0147 0.73 -0.7 157,418 - PP_0147 0.76 +0.2 157,520 + PP_0147 0.84 +0.1 157,521 - PP_0147 0.84 -0.4 157,577 - PP_0147 0.89 -1.5 157,682 + +1.8 157,682 + +0.8 157,682 + +1.5 157,682 + +0.1 157,683 - +0.8 157,731 + +1.6 157,731 + -0.3 157,731 + +0.9 157,731 + -0.2 157,732 - -0.3 157,817 + +1.3 157,839 + -0.7 157,839 + +0.9 157,839 + -0.0 157,839 + -0.9 157,839 + +1.7 157,839 + +1.2 157,839 + +0.9 157,840 - +0.6 157,840 - +1.8 157,840 - +0.5 157,840 - +1.6 157,840 - -1.2 157,922 - +2.2 157,936 + +0.8 157,936 + +0.5 157,936 + +0.5 157,987 + +0.3 157,987 + +0.2 157,988 - -0.4 158,004 - +2.3 158,004 - +0.8 158,175 + PP_0148 0.46 -2.3 158,176 + PP_0148 0.46 +0.6 158,176 + PP_0148 0.46 -0.0 158,176 + PP_0148 0.46 +0.7 158,176 + PP_0148 0.46 +0.6 158,176 + PP_0148 0.46 +1.8 158,176 + PP_0148 0.46 +1.0 158,176 + PP_0148 0.46 -1.5 158,177 - PP_0148 0.46 +2.1 158,177 - PP_0148 0.46 +0.8 158,177 - PP_0148 0.46 +0.5 158,177 - PP_0148 0.46 +0.6 158,203 + PP_0148 0.53 +0.9 158,251 - PP_0148 0.64 +1.4 158,304 - PP_0148 0.78 +1.2 158,319 + PP_0148 0.81 -1.2 158,319 + +1.3 158,319 + PP_0148 0.81 +0.1 158,319 + PP_0148 0.81 +0.4 158,319 + PP_0148 0.81 +1.1 158,320 - PP_0148 0.81 +0.1 158,320 - PP_0148 0.81 +0.8 158,320 - PP_0148 0.81 +0.3 158,320 - PP_0148 0.81 +3.6 158,320 - PP_0148 0.81 +1.8 158,393 - +3.2 158,429 + +1.1 158,429 + +1.8 158,429 + +2.0 158,429 + +2.0 158,429 + +0.4 158,430 - -3.1 158,430 - -1.3 158,430 - +1.2 158,430 - +2.5 158,430 - +1.8 158,430 - +0.7 158,430 - -2.0 158,430 - +3.3 158,430 - +0.5 158,430 - +1.3 158,430 - +1.5 158,770 + PP_0149 0.17 +0.3 158,770 + PP_0149 0.17 +1.6 158,771 - PP_0149 0.17 +2.2 158,880 - PP_0149 0.23 +0.2 158,937 + PP_0149 0.26 +1.3 159,041 + +1.3 159,041 + PP_0149 0.31 +0.3 159,042 - PP_0149 0.31 +2.2 159,042 - PP_0149 0.31 +2.2 159,042 - PP_0149 0.31 +1.0 159,042 - PP_0149 0.31 +0.6 159,193 + PP_0149 0.39 +1.2 159,193 + PP_0149 0.39 +1.8 159,193 + PP_0149 0.39 +1.6 159,193 + PP_0149 0.39 +0.3 159,194 - PP_0149 0.39 -0.9 159,194 - PP_0149 0.39 +0.5 159,194 - PP_0149 0.39 +0.7 159,194 - PP_0149 0.39 +0.4 159,194 - PP_0149 0.39 +0.7 159,194 - PP_0149 0.39 -1.1 159,295 + PP_0149 0.44 +0.5 159,295 + PP_0149 0.44 +1.8 159,296 - PP_0149 0.44 +1.5 159,343 + PP_0149 0.47 +2.2
Or see this region's nucleotide sequence