Strain Fitness in Pseudomonas putida KT2440 around PP_0136

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
142,564	+		PP_0134	0.62	+1.1
142,564	+		PP_0134	0.62	-1.1
142,565	-		PP_0134	0.62	-0.4
142,565	-		PP_0134	0.62	-0.9
142,565	-		PP_0134	0.62	-0.3
142,691	-		PP_0134	0.77	+0.4
142,691	-		PP_0134	0.77	+1.7
142,921	-				+1.2
142,921	-				+1.1
142,921	-				+0.4
143,009	+				+2.9
143,157	-		PP_5428	0.36	+1.8
143,158	+		PP_5428	0.36	-2.0
143,158	+		PP_5428	0.36	+0.6
143,158	+		PP_5428	0.36	+1.3
143,158	+		PP_5428	0.36	+1.6
143,159	-		PP_5428	0.36	-0.1
143,161	+		PP_5428	0.37	-0.7
143,161	+		PP_5428	0.37	+1.1
143,161	+		PP_5428	0.37	+0.7
143,162	-		PP_5428	0.37	-1.3
143,162	-		PP_5428	0.37	-0.0
143,383	+				+1.7
143,383	+				-2.5
143,383	+				+1.6
143,384	-				-0.3
143,384	-				+0.8
143,384	-				-1.9
143,384	-				-0.9
143,436	+		PP_0135	0.30	+1.0
143,436	+		PP_0135	0.30	-1.7
143,437	-		PP_0135	0.31	-1.8
143,467	+		PP_0135	0.49	+2.1
143,467	+		PP_0135	0.49	+0.3
143,467	+		PP_0135	0.49	+1.3
143,468	-		PP_0135	0.50	+1.0
143,468	-		PP_0135	0.50	+1.3
143,468	-		PP_0135	0.50	-2.0
143,514	+		PP_0135	0.78	+3.2
143,515	-		PP_0135	0.79	-0.1
143,525	+		PP_0135	0.85	+0.6
143,788	+		PP_0136	0.50	+1.3
143,788	+		PP_0136	0.50	+1.0
143,788	+		PP_0136	0.50	+0.9
143,788	+		PP_0136	0.50	+1.1
143,788	+		PP_0136	0.50	+2.0
143,789	-		PP_0136	0.51	-0.5
143,789	-		PP_0136	0.51	+0.1
143,789	-		PP_0136	0.51	+0.9
143,789	-		PP_0136	0.51	-0.7
143,789	-		PP_0136	0.51	-0.3
143,789	-		PP_0136	0.51	-0.1
143,831	-		PP_0136	0.59	+1.8
143,831	-		PP_0136	0.59	+2.1
143,831	-		PP_0136	0.59	+0.9
143,831	-		PP_0136	0.59	+1.6
143,875	+		PP_0136	0.69	+1.5
144,017	-				-1.2
144,064	+				-0.7
144,065	-				-0.7
144,065	-				+2.1
144,067	+				-2.0
144,067	+				-1.3
144,068	-				+1.4
144,068	-				+1.2
144,068	-				+0.6
144,085	-				-2.4
144,086	+				+0.2
144,086	+				-2.8
144,087	-				+0.7
144,099	+				+1.0
144,099	+				+2.0
144,099	+				+1.3
144,099	+				+2.7
144,099	+				-0.3
144,100	-				+0.4
144,100	-				+0.6
144,100	-				+0.3
144,160	+				+0.8
144,161	-				+1.5
144,178	+				+0.6
144,178	+				+0.3
144,179	-				+1.6
144,202	+				+1.1
144,203	-				+0.6
144,262	-				+1.1
144,294	+				-1.6
144,295	-				+0.3
144,295	-				-0.1
144,295	-				-0.6
144,295	-				-0.9
144,352	+				+0.6
144,352	+				+2.4
144,353	-				-0.6
144,386	+				+1.8
144,386	+				+1.6
144,386	+				+3.0
144,386	+				+0.6
144,387	-				-2.6
144,439	+				-0.6
144,439	+				+0.8
144,503	-				+0.0
144,545	-				+1.5
144,581	-				-0.7
144,605	+				-0.5
144,605	+				+1.8
144,605	+				+1.9
144,606	-				-0.0
144,606	-				+0.9
144,606	-				+0.8
144,660	+				+0.3
144,660	+				+0.7
144,660	+				+1.9
144,661	-				+0.7
144,661	-				+0.7
144,661	-				-0.3
144,661	-				+0.4
144,661	-				-0.7
144,661	-				+1.3
144,661	-				+0.5
144,661	-				+1.3
144,688	+				+0.8
144,688	-				+0.3
144,688	-				-0.7
144,688	-				+1.6
144,760	+				-1.6
144,760	+				-2.0