Strain Fitness in Pseudomonas putida KT2440 around PP_0134

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
141,119	-		PP_0133	0.46	-0.3
141,199	+		PP_0133	0.52	+1.0
141,200	-		PP_0133	0.52	+1.7
141,200	-		PP_0133	0.52	-0.8
141,396	+		PP_0133	0.67	-0.1
141,396	+		PP_0133	0.67	+0.6
141,397	-		PP_0133	0.67	+0.1
141,427	+		PP_0133	0.69	-0.3
141,428	-		PP_0133	0.69	-3.8
141,530	+		PP_0133	0.76	-2.8
141,530	+		PP_0133	0.76	+1.0
141,559	+		PP_0133	0.79	+2.3
141,559	+		PP_0133	0.79	+0.2
141,560	-		PP_0133	0.79	+1.1
141,622	-		PP_0133	0.83	+1.2
141,682	+		PP_0133	0.88	+0.9
141,682	+		PP_0133	0.88	+0.1
141,682	+		PP_0133	0.88	+1.7
141,683	-		PP_0133	0.88	+1.7
141,683	-		PP_0133	0.88	-0.3
141,683	-		PP_0133	0.88	-1.1
141,683	-		PP_0133	0.88	+1.5
141,683	-		PP_0133	0.88	-0.0
141,683	-		PP_0133	0.88	+0.9
141,683	-		PP_0133	0.88	-0.3
141,707	-		PP_0133	0.90	+1.0
141,749	+				+0.3
141,750	-				+0.6
141,874	+				-1.6
141,874	+				+1.8
141,875	-				+0.5
141,875	-				+0.6
141,875	-				+0.9
141,879	-				+1.1
141,879	-				+1.3
141,940	+				+0.9
141,962	+				+1.9
141,963	-				+0.9
141,963	-				-0.5
141,963	-				-0.3
141,991	+				+1.0
141,991	+				+1.0
141,992	-				+0.6
141,992	-				+1.2
141,992	-				+1.3
142,074	+				+0.5
142,074	+				-0.8
142,075	-				+0.5
142,111	-				+1.8
142,316	+		PP_0134	0.32	-2.1
142,317	-		PP_0134	0.32	+1.2
142,376	-		PP_0134	0.39	-0.6
142,458	+		PP_0134	0.49	-1.2
142,458	+		PP_0134	0.49	-1.7
142,458	+		PP_0134	0.49	+1.3
142,458	+		PP_0134	0.49	+0.3
142,459	-		PP_0134	0.49	+0.7
142,459	-		PP_0134	0.49	+0.7
142,459	-		PP_0134	0.49	+2.4
142,459	-		PP_0134	0.49	-1.7
142,460	+		PP_0134	0.49	-0.3
142,460	+		PP_0134	0.49	-0.5
142,460	+		PP_0134	0.49	+2.0
142,460	+		PP_0134	0.49	-1.3
142,461	-		PP_0134	0.49	+2.9
142,461	-		PP_0134	0.49	+1.6
142,461	-		PP_0134	0.49	+0.5
142,461	-		PP_0134	0.49	+1.7
142,461	-		PP_0134	0.49	-1.7
142,461	-		PP_0134	0.49	+1.2
142,461	-		PP_0134	0.49	+0.8
142,466	+		PP_0134	0.50	-1.7
142,466	+		PP_0134	0.50	+1.3
142,467	-		PP_0134	0.50	+2.2
142,564	+		PP_0134	0.62	+1.1
142,564	+		PP_0134	0.62	-1.1
142,565	-		PP_0134	0.62	-0.4
142,565	-		PP_0134	0.62	-0.9
142,565	-		PP_0134	0.62	-0.3
142,691	-		PP_0134	0.77	+0.4
142,691	-		PP_0134	0.77	+1.7
142,921	-				+1.2
142,921	-				+1.1
142,921	-				+0.4
143,009	+				+2.9
143,157	-		PP_5428	0.36	+1.8
143,158	+		PP_5428	0.36	-2.0
143,158	+		PP_5428	0.36	+0.6
143,158	+		PP_5428	0.36	+1.3
143,158	+		PP_5428	0.36	+1.6
143,159	-		PP_5428	0.36	-0.1
143,161	+		PP_5428	0.37	-0.7
143,161	+		PP_5428	0.37	+1.1
143,161	+		PP_5428	0.37	+0.7
143,162	-		PP_5428	0.37	-1.3
143,162	-		PP_5428	0.37	-0.0
143,383	+				+1.7
143,383	+				-2.5
143,383	+				+1.6
143,384	-				-0.3
143,384	-				+0.8
143,384	-				-1.9
143,384	-				-0.9
143,436	+		PP_0135	0.30	+1.0
143,436	+		PP_0135	0.30	-1.7
143,437	-		PP_0135	0.31	-1.8
143,467	+		PP_0135	0.49	+2.1
143,467	+		PP_0135	0.49	+0.3
143,467	+		PP_0135	0.49	+1.3
143,468	-		PP_0135	0.50	+1.0
143,468	-		PP_0135	0.50	+1.3
143,468	-		PP_0135	0.50	-2.0
143,514	+		PP_0135	0.78	+3.2
143,515	-		PP_0135	0.79	-0.1
143,525	+		PP_0135	0.85	+0.6
143,788	+		PP_0136	0.50	+1.3
143,788	+		PP_0136	0.50	+1.0
143,788	+		PP_0136	0.50	+0.9
143,788	+		PP_0136	0.50	+1.1
143,788	+		PP_0136	0.50	+2.0
143,789	-		PP_0136	0.51	-0.5
143,789	-		PP_0136	0.51	+0.1
143,789	-		PP_0136	0.51	+0.9
143,789	-		PP_0136	0.51	-0.7
143,789	-		PP_0136	0.51	-0.3
143,789	-		PP_0136	0.51	-0.1
143,831	-		PP_0136	0.59	+1.8
143,831	-		PP_0136	0.59	+2.1
143,831	-		PP_0136	0.59	+0.9
143,831	-		PP_0136	0.59	+1.6
143,875	+		PP_0136	0.69	+1.5