Strain Fitness in Pseudomonas putida KT2440 around PP_0112

Experiment: P. putida PUT 7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0110 and PP_0111 overlap by 4 nucleotidesPP_0111 and PP_0112 are separated by 93 nucleotidesPP_0112 and PP_0113 are separated by 64 nucleotidesPP_0113 and PP_0114 overlap by 1 nucleotides PP_0110: PP_0110 - CyoE like protoheme IX farnesyltransferase, at 115,698 to 116,591 _0110 PP_0111: PP_0111 - Electron transport protein SCO1/SenC, at 116,588 to 117,220 _0111 PP_0112: PP_0112 - methionine ABC transporter, periplasmic binding protein, at 117,314 to 118,084 _0112 PP_0113: PP_0113 - methionine ABC transporter, permease protein, at 118,149 to 118,820 _0113 PP_0114: PP_0114 - methionine ABC transporter ATP-binding protein, at 118,820 to 119,827 _0114 Position (kb) 117 118 119Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 116.348 kb on + strand, within PP_0110at 116.348 kb on + strand, within PP_0110at 116.348 kb on + strand, within PP_0110at 116.358 kb on + strand, within PP_0110at 116.359 kb on - strand, within PP_0110at 116.359 kb on - strand, within PP_0110at 116.395 kb on - strand, within PP_0110at 116.395 kb on - strand, within PP_0110at 116.438 kb on - strand, within PP_0110at 116.478 kb on + strand, within PP_0110at 116.478 kb on + strand, within PP_0110at 116.479 kb on - strand, within PP_0110at 116.479 kb on - strand, within PP_0110at 116.479 kb on - strand, within PP_0110at 116.479 kb on - strand, within PP_0110at 116.483 kb on + strand, within PP_0110at 116.484 kb on - strand, within PP_0110at 116.520 kb on + strandat 116.521 kb on - strandat 116.525 kb on + strandat 116.526 kb on - strandat 116.532 kb on + strandat 116.532 kb on + strandat 116.533 kb on - strandat 116.571 kb on + strandat 116.572 kb on - strandat 116.572 kb on - strandat 116.587 kb on + strandat 116.588 kb on - strandat 116.588 kb on - strandat 116.588 kb on - strandat 116.588 kb on - strandat 116.668 kb on + strand, within PP_0111at 116.668 kb on + strand, within PP_0111at 116.668 kb on + strand, within PP_0111at 116.668 kb on + strand, within PP_0111at 116.668 kb on + strand, within PP_0111at 116.668 kb on + strand, within PP_0111at 116.828 kb on + strand, within PP_0111at 116.828 kb on + strand, within PP_0111at 116.828 kb on + strand, within PP_0111at 116.829 kb on - strand, within PP_0111at 116.829 kb on - strand, within PP_0111at 116.834 kb on + strand, within PP_0111at 116.834 kb on + strand, within PP_0111at 116.835 kb on - strand, within PP_0111at 116.835 kb on - strand, within PP_0111at 116.835 kb on - strand, within PP_0111at 116.835 kb on - strand, within PP_0111at 116.835 kb on - strand, within PP_0111at 116.835 kb on - strand, within PP_0111at 116.835 kb on - strand, within PP_0111at 116.945 kb on - strand, within PP_0111at 116.975 kb on + strand, within PP_0111at 116.975 kb on + strand, within PP_0111at 116.975 kb on + strand, within PP_0111at 116.975 kb on + strand, within PP_0111at 116.985 kb on - strand, within PP_0111at 117.093 kb on - strand, within PP_0111at 117.094 kb on + strand, within PP_0111at 117.095 kb on - strand, within PP_0111at 117.237 kb on - strandat 117.237 kb on - strandat 117.256 kb on + strandat 117.256 kb on + strandat 117.257 kb on - strandat 117.257 kb on - strandat 117.257 kb on - strandat 117.295 kb on + strandat 117.305 kb on + strandat 117.305 kb on + strandat 117.306 kb on - strandat 117.343 kb on - strandat 117.450 kb on + strand, within PP_0112at 117.451 kb on - strand, within PP_0112at 117.451 kb on - strand, within PP_0112at 117.516 kb on + strand, within PP_0112at 117.517 kb on - strand, within PP_0112at 117.517 kb on - strand, within PP_0112at 117.542 kb on + strand, within PP_0112at 117.542 kb on + strand, within PP_0112at 117.542 kb on + strand, within PP_0112at 117.543 kb on - strand, within PP_0112at 117.774 kb on + strand, within PP_0112at 117.774 kb on + strand, within PP_0112at 117.775 kb on - strand, within PP_0112at 117.775 kb on - strand, within PP_0112at 117.775 kb on - strand, within PP_0112at 117.852 kb on + strand, within PP_0112at 117.853 kb on - strand, within PP_0112at 117.918 kb on + strand, within PP_0112at 117.919 kb on - strand, within PP_0112at 117.919 kb on - strand, within PP_0112at 117.947 kb on + strand, within PP_0112at 118.022 kb on - strandat 118.150 kb on + strandat 118.150 kb on + strandat 118.151 kb on - strandat 118.151 kb on - strandat 118.154 kb on + strandat 118.209 kb on + strandat 118.209 kb on + strandat 118.221 kb on + strand, within PP_0113at 118.221 kb on + strand, within PP_0113at 118.221 kb on + strand, within PP_0113at 118.233 kb on + strand, within PP_0113at 118.234 kb on - strand, within PP_0113at 118.324 kb on + strand, within PP_0113at 118.354 kb on - strand, within PP_0113at 118.512 kb on + strand, within PP_0113at 118.551 kb on - strand, within PP_0113at 118.645 kb on + strand, within PP_0113at 118.645 kb on + strand, within PP_0113at 118.645 kb on + strand, within PP_0113at 118.646 kb on - strand, within PP_0113at 118.646 kb on - strand, within PP_0113at 118.716 kb on + strand, within PP_0113at 118.716 kb on + strand, within PP_0113at 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.841 kb on + strandat 118.841 kb on + strandat 118.841 kb on + strandat 118.841 kb on + strandat 118.842 kb on - strandat 118.842 kb on - strandat 118.842 kb on - strandat 118.842 kb on - strandat 118.842 kb on - strandat 118.939 kb on + strand, within PP_0114at 118.959 kb on + strand, within PP_0114at 118.959 kb on + strand, within PP_0114at 118.959 kb on + strand, within PP_0114at 118.960 kb on - strand, within PP_0114at 118.960 kb on - strand, within PP_0114at 119.004 kb on + strand, within PP_0114at 119.004 kb on + strand, within PP_0114at 119.004 kb on + strand, within PP_0114at 119.005 kb on - strand, within PP_0114at 119.005 kb on - strand, within PP_0114at 119.005 kb on - strand, within PP_0114at 119.005 kb on - strand, within PP_0114at 119.033 kb on + strand, within PP_0114

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1
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116,348 + PP_0110 0.73 -0.3
116,348 + PP_0110 0.73 -1.8
116,348 + PP_0110 0.73 +0.5
116,358 + PP_0110 0.74 -0.4
116,359 - PP_0110 0.74 +0.7
116,359 - PP_0110 0.74 -3.7
116,395 - PP_0110 0.78 -1.7
116,395 - PP_0110 0.78 -0.4
116,438 - PP_0110 0.83 +0.2
116,478 + PP_0110 0.87 +0.4
116,478 + PP_0110 0.87 -0.1
116,479 - PP_0110 0.87 +1.0
116,479 - PP_0110 0.87 +0.7
116,479 - PP_0110 0.87 -0.1
116,479 - PP_0110 0.87 +0.2
116,483 + PP_0110 0.88 +1.3
116,484 - PP_0110 0.88 +0.5
116,520 + +0.1
116,521 - +0.6
116,525 + +1.0
116,526 - -1.1
116,532 + +1.9
116,532 + +0.4
116,533 - -1.0
116,571 + +0.2
116,572 - +1.0
116,572 - +1.7
116,587 + -0.1
116,588 - -0.4
116,588 - -3.5
116,588 - -1.6
116,588 - -0.0
116,668 + PP_0111 0.13 -0.0
116,668 + PP_0111 0.13 +1.5
116,668 + PP_0111 0.13 -0.6
116,668 + PP_0111 0.13 +1.2
116,668 + PP_0111 0.13 +1.0
116,668 + PP_0111 0.13 -0.6
116,828 + PP_0111 0.38 -1.5
116,828 + PP_0111 0.38 -1.5
116,828 + PP_0111 0.38 -1.3
116,829 - PP_0111 0.38 +1.3
116,829 - PP_0111 0.38 +0.3
116,834 + PP_0111 0.39 -0.9
116,834 + PP_0111 0.39 +2.9
116,835 - PP_0111 0.39 -0.1
116,835 - PP_0111 0.39 -1.1
116,835 - PP_0111 0.39 -0.3
116,835 - PP_0111 0.39 +1.1
116,835 - PP_0111 0.39 -2.4
116,835 - PP_0111 0.39 +1.0
116,835 - PP_0111 0.39 -0.7
116,945 - PP_0111 0.56 -3.4
116,975 + PP_0111 0.61 -0.2
116,975 + PP_0111 0.61 -2.4
116,975 + PP_0111 0.61 -0.9
116,975 + PP_0111 0.61 +0.6
116,985 - PP_0111 0.63 -1.0
117,093 - PP_0111 0.80 -0.3
117,094 + PP_0111 0.80 +0.5
117,095 - PP_0111 0.80 +0.5
117,237 - +1.5
117,237 - +0.5
117,256 + +1.6
117,256 + -0.0
117,257 - -0.9
117,257 - +0.8
117,257 - -0.1
117,295 + +1.3
117,305 + -1.0
117,305 + +0.3
117,306 - +0.1
117,343 - +2.2
117,450 + PP_0112 0.18 +0.6
117,451 - PP_0112 0.18 -1.9
117,451 - PP_0112 0.18 +1.7
117,516 + PP_0112 0.26 +1.0
117,517 - PP_0112 0.26 -0.4
117,517 - PP_0112 0.26 +0.1
117,542 + PP_0112 0.30 +0.2
117,542 + PP_0112 0.30 +1.4
117,542 + PP_0112 0.30 -0.7
117,543 - PP_0112 0.30 +0.3
117,774 + PP_0112 0.60 +2.1
117,774 + PP_0112 0.60 +0.7
117,775 - PP_0112 0.60 +0.5
117,775 - PP_0112 0.60 +0.1
117,775 - PP_0112 0.60 +0.5
117,852 + PP_0112 0.70 +3.2
117,853 - PP_0112 0.70 -1.4
117,918 + PP_0112 0.78 +1.1
117,919 - PP_0112 0.78 +1.5
117,919 - PP_0112 0.78 +1.6
117,947 + PP_0112 0.82 +0.2
118,022 - +1.5
118,150 + -0.2
118,150 + +0.6
118,151 - +0.7
118,151 - -0.3
118,154 + -3.4
118,209 + +0.4
118,209 + -0.2
118,221 + PP_0113 0.11 -1.9
118,221 + PP_0113 0.11 -1.1
118,221 + PP_0113 0.11 -1.5
118,233 + PP_0113 0.12 -3.4
118,234 - PP_0113 0.13 -0.1
118,324 + PP_0113 0.26 -2.7
118,354 - PP_0113 0.31 -2.7
118,512 + PP_0113 0.54 +1.3
118,551 - PP_0113 0.60 +1.3
118,645 + PP_0113 0.74 +0.9
118,645 + PP_0113 0.74 +0.9
118,645 + PP_0113 0.74 +1.3
118,646 - PP_0113 0.74 -2.1
118,646 - PP_0113 0.74 +0.6
118,716 + PP_0113 0.84 +1.4
118,716 + PP_0113 0.84 +1.2
118,837 + +0.6
118,837 + +0.4
118,837 + +0.6
118,837 + -1.5
118,837 + +0.3
118,837 + -0.6
118,837 + -0.1
118,837 + -3.5
118,838 - +1.3
118,838 - +0.9
118,838 - +0.7
118,838 - +0.8
118,838 - +1.0
118,838 - -1.9
118,838 - -0.3
118,841 + -0.5
118,841 + +0.9
118,841 + +1.0
118,841 + +4.3
118,842 - +1.2
118,842 - +0.5
118,842 - +0.6
118,842 - +0.9
118,842 - +1.2
118,939 + PP_0114 0.12 -0.3
118,959 + PP_0114 0.14 +0.6
118,959 + PP_0114 0.14 +1.6
118,959 + PP_0114 0.14 +0.6
118,960 - PP_0114 0.14 -0.1
118,960 - PP_0114 0.14 -1.5
119,004 + PP_0114 0.18 -3.6
119,004 + PP_0114 0.18 -1.6
119,004 + PP_0114 0.18 -0.4
119,005 - PP_0114 0.18 +0.1
119,005 - PP_0114 0.18 +0.7
119,005 - PP_0114 0.18 +1.3
119,005 - PP_0114 0.18 -0.1
119,033 + PP_0114 0.21 -1.0

Or see this region's nucleotide sequence